SMTL ID : 9iud.2 (1 other biounit)

High resolution structure of Lectin-Like ox-LDL Receptor 1 with BI-0115 in space group P 21 21 21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-tetramer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 12 residues within 4Å: Chain A: S.61, Y.62, S.63, S.64, R.113 Chain B: S.64, F.65 Chain D: G.97, A.98, Y.103, A.118, E.119 8 PLIP interactions: 4 interactions with chain D, 4 interactions with chain A Hydrogen bonds: D:A.98, D:Y.103, D:A.118, A:S.63, A:R.113, A:R.113 Water bridges: D:Y.103, A:S.64 GOL.2: 9 residues within 4Å: Chain A: G.97, A.98, Y.103, A.118, E.119 Chain C: S.64, F.65 Chain D: S.61, R.113 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain D Hydrogen bonds: A:A.98, A:A.118, D:S.61, D:R.113, D:R.113 GOL.4: 9 residues within 4Å: Chain A: I.14, A.59, Y.62 Chain B: D.12, I.14, Y.21, L.22, F.23, Y.62 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.21, B:F.23, B:Y.62 Water bridges: B:F.23, A:Y.62

2 x NJT: 9-chloranyl-5-propyl-11~{H}-pyrido[2,3-b][1,4]benzodiazepin-6-one(Non-covalent)

NJT.3: 13 residues within 4Å: Chain A: S.27, S.64, F.65, P.66, A.124 Chain B: R.113 Chain D: P.66, W.68, Y.110, L.123, A.124, A.125 Ligands: NJT.5 7 PLIP interactions: 4 interactions with chain D, 3 interactions with chain A Hydrophobic interactions: D:L.123, D:A.125, A:F.65, A:F.65 Hydrogen bonds: D:A.124, D:A.124 Water bridges: A:Q.112 NJT.5: 13 residues within 4Å: Chain A: P.66, W.68, Y.110, L.123, A.124 Chain C: R.113 Chain D: S.27, S.64, F.65, P.66, A.124, A.125 Ligands: NJT.3 10 PLIP interactions: 4 interactions with chain D, 6 interactions with chain A Hydrophobic interactions: D:F.65, D:F.65, D:P.66, A:P.66, A:L.123, A:L.123 Water bridges: D:Q.112 Hydrogen bonds: A:A.124, A:A.124 pi-Stacking: A:Y.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

khan, M.A. et al., High resolution structure of Lectin-Like ox-LDL Receptor 1 with BI-0115 in space group P 21 21 21. To Be Published

Release Date

2025-07-23

Peptides

Oxidized low-density lipoprotein receptor 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Oxidized low-density lipoprotein receptor 1

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