SMTL ID : 9ivk.1

cryo-EM structure of a tmFAP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x KY6: 4-[(Z)-1-cyano-2-{6-[(2-hydroxyethyl)(methyl)amino]-1-benzothiophen-2-yl}ethenyl]benzonitrile(Non-covalent)

KY6.1: 16 residues within 4Å: Chain A: I.15, I.16, V.19, D.51, M.55, A.65, A.227, M.231, A.234, T.238, W.255, V.259, L.262, L.263, A.266, I.270 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.19, A:V.19, A:V.19, A:A.227, A:L.263, A:I.270 Hydrogen bonds: A:T.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J. et al., De novo design of transmembrane fluorescence-activating proteins. Nature (2025)

Release Date

2024-11-20

Peptides

HBC599 membrane protein binder: A
Heavy chain, Fab fragment: B
Light Chain, Fab fragment: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Membrane

We predict this structure to be a membrane protein.
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HBC599 membrane protein binder

Heavy chain, Fab fragment

Light Chain, Fab fragment

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