SMTL ID : 9ixb.1

Structure of tubulin and nitrogen-containing heterocyclic substituted podophyllotoxin derivatives complex

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 3.48 Å
Oligo State
hetero-2-2-1-1-mer
Ligands
2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
1 x CA: CALCIUM ION(Non-covalent)
1 x NA: SODIUM ION(Non-functional Binders)
1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
1 x 01: (5~{S},5~{a}~{S},8~{a}~{R},9~{R})-5-(1~{H}-indazol-5-ylamino)-9-(3,4,5-trimethoxyphenyl)-5~{a},6,8~{a},9-tetrahydro-5~{H}-[2]benzofuro[6,5-f][1,3]benzodioxol-8-one
2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
1 x IMD: IMIDAZOLE(Non-covalent)
1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Bi, J., Structure of tubulin and nitrogen-containing heterocyclic substituted podophyllotoxin derivatives complex. To Be Published
Release Date
2025-07-30
Peptides
Detyrosinated tubulin alpha-1B chain: AC
Tubulin beta chain: BD
Stathmin-4: E
Tubulin--tyrosine ligase: F
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
C
C
B
B
D
D
E
E
F
F

Detyrosinated tubulin alpha-1B chain

Tubulin beta chain

Stathmin-4

Tubulin--tyrosine ligase

Related Entries With Identical Sequence

5gon.1 | 5lp6.1 | 5z4p.1 | 6gze.1 | 6i5c.1 | 6s9e.1 | 7e4p.1 | 7e4q.1 | 7e4r.1 | 7e4y.1 | 7e4z.1 | 7jfr.1 | 8clb.1 | 8clc.1 | 8cle.1 | 8clf.1 | 8clg.1 | 8clh.1 | 8wmo.1 | 8wmu.1 | 8yem.1 | 8yer.1 | 8yeu.1 | 8ytx.1 | 8yu9.1 | 8yua.1