SMTL ID : 9j0g.4 (3 other biounits)

Crystal structure of RhoA-TP1001 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x U6L: (1~{R})-1-(3-ethylphenyl)ethane-1,2-diol(Non-covalent)

U6L.1: 5 residues within 4Å: Chain A: V.35, P.36, T.37 Ligands: GDP.2, MG.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.37 Hydrogen bonds: A:P.36

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 18 residues within 4Å: Chain A: G.14, A.15, C.16, G.17, K.18, T.19, C.20, F.30, P.36, K.118, D.120, L.121, S.160, A.161, K.162 Ligands: U6L.1, MG.3, MG.4 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:A.15, A:C.16, A:G.17, A:K.18, A:T.19, A:T.19, A:C.20, A:K.118, A:K.162 Salt bridges: A:K.18, A:D.120 pi-Stacking: A:F.30

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain A: T.19, V.35, P.36, T.37 Ligands: U6L.1, GDP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:P.36 MG.4: 7 residues within 4Å: Chain A: K.18, T.19, T.37, D.59, T.60, A.61 Ligands: GDP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.37, A:T.60

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.5: 5 residues within 4Å: Chain A: E.40, N.41, A.56, L.57, W.58 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.42, A:W.58 pi-Cation interactions: A:W.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, L. et al., Crystal structure of RhoA-TP1001 complex. To Be Published

Release Date

2025-08-13

Peptides

Transforming protein RhoA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Transforming protein RhoA

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