SMTL ID : 9j1g.1

ESTS1 phthalate ester degrading esterase from Sulfobacillus acidophilus in complex with phthalate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: Q.171, R.172, D.175, P.230, W.231, S.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.231, A:S.237 EDO.2: 7 residues within 4Å: Chain A: T.63, A.132, I.135, D.136, R.139, R.172, E.176 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.63, A:R.139, A:R.172 Water bridges: A:R.172 EDO.3: 5 residues within 4Å: Chain A: G.58, T.59, V.60, I.69, W.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.59, A:T.59, A:W.140 EDO.4: 5 residues within 4Å: Chain A: F.127, P.128, R.222, H.229, W.231 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.222, A:R.222, A:H.229 EDO.5: 5 residues within 4Å: Chain A: P.52, V.53, D.54, D.75, Q.108 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.52, A:Q.108 Water bridges: A:V.53, A:D.54, A:D.54 EDO.6: 4 residues within 4Å: Chain A: A.262, Y.263, E.265, A.266 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.266 EDO.8: 7 residues within 4Å: Chain A: F.37, L.207, H.284, G.285, T.288, M.289 Ligands: PHT.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.288 EDO.9: 6 residues within 4Å: Chain A: Q.214, G.217, E.218, L.221, T.223, P.224 No protein-ligand interaction detected (PLIP) EDO.11: 6 residues within 4Å: Chain A: R.78, F.79, V.110, A.303, L.306, E.307 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.78, A:V.110

2 x PHT: PHTHALIC ACID(Non-covalent)

PHT.7: 15 residues within 4Å: Chain A: F.37, G.88, G.89, G.90, F.93, H.99, D.159, S.160, A.161, Y.187, L.208, F.216, H.284 Ligands: EDO.8, PHT.10 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.37, A:F.216 Hydrogen bonds: A:G.89, A:G.90, A:A.161 Water bridges: A:T.288 Salt bridges: A:H.99, A:H.284 PHT.10: 15 residues within 4Å: Chain A: G.90, F.91, S.160, A.161, A.189, M.192, K.199, L.208, M.213, F.216, G.217, Y.220, L.221, L.256 Ligands: PHT.7 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.91, A:F.216 Hydrogen bonds: A:A.161 Water bridges: A:K.199 Salt bridges: A:K.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verma, S. et al., Mechanistic and structural insights into EstS1 esterase: A potent broad-spectrum phthalate diester degrading enzyme. Structure (2025)

Release Date

2024-12-25

Peptides

Alpha/beta hydrolase fold-3 domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha/beta hydrolase fold-3 domain-containing protein

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