SMTL ID : 9j1o.1

Mouse Spi-B Ets domain in complex with DNA containing GGAA sequence

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x 3D1: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol(Non-functional Binders)

3D1.1: 2 residues within 4Å: Chain A: T.1 Chain B: A.15 No protein-ligand interaction detected (PLIP)

1 x THM: THYMIDINE(Non-functional Binders)

THM.2: 2 residues within 4Å: Chain A: G.15 Chain B: C.1 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain B: C.2, A.3 Chain C: K.11, R.14 1 PLIP interactions: 1 interactions with chain C Water bridges: C:K.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nonaka, Y. et al., Structural analysis of Spi-B DNA-binding Ets domain recognizing 5'-AGAA-3' and 5'-GGAA-3' sequences. Biochem.Biophys.Res.Commun. (2025)

Release Date

2025-06-18

Peptides

Transcription factor Spi-B: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

Transcription factor Spi-B

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