SMTL ID : 9j1x.1

Structure of mutant evolved from PaDa-I, unspecific peroxygenase from Agrocybe aegerita

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: E.121, G.122, S.125 Ligands: HEM.5 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.121, A:G.122, A:S.125, H2O.5, H2O.6

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: L.278, E.281, N.285, F.322 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.281, A:E.281, A:F.322 Water bridges: A:F.322 NAG.3: 2 residues within 4Å: Chain A: N.140, T.142 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.140, A:T.142, A:R.171 NAG.4: 7 residues within 4Å: Chain A: F.154, G.155, G.156, N.160, L.161, T.162, Q.212 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.161, A:T.162, A:T.162 Water bridges: A:N.160, A:N.160, A:Q.212, A:Q.212

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.5: 27 residues within 4Å: Chain A: P.34, C.35, P.36, G.37, L.38, I.58, V.62, F.66, F.68, A.76, T.77, A.80, L.114, F.120, E.121, G.122, S.125, M.126, T.127, R.188, E.195, F.198, P.199, L.202, F.203, F.222 Ligands: MG.1 27 PLIP interactions: 27 interactions with chain A, Hydrophobic interactions: A:P.34, A:P.34, A:P.36, A:L.38, A:I.58, A:F.66, A:F.68, A:F.68, A:A.76, A:A.80, A:L.114, A:F.120, A:F.120, A:F.120, A:E.195, A:F.198, A:P.199, A:L.202, A:L.202, A:F.203 Hydrogen bonds: A:G.122, A:S.125, A:M.126, A:T.127, A:R.128 Salt bridges: A:R.188 Metal complexes: A:C.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., Structure of mutant evolved from PaDa-I, unspecific peroxygenase from Agrocybe aegerita. To Be Published

Release Date

2025-08-13

Peptides

Aromatic peroxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aromatic peroxygenase