SMTL ID : 9j20.1 (1 other biounit)

Structure of WDR5 in complex with KIF2A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x GLY- SER- ALA- ARG- ALA- ARG- PRO- SER: Kinesin-like protein KIF2A(Non-covalent)

GLY-SER-ALA-ARG-ALA-ARG-PRO-SER.1: 21 residues within 4Å: Chain A: A.28, S.30, A.46, G.70, I.71, S.72, D.73, D.88, Y.112, F.114, C.115, F.130, S.156, Y.172, L.215, K.240, Y.241, C.242, F.244, I.286, L.302 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:A.28, A:Y.112, A:F.114, A:F.114, A:F.130, A:I.286, A:L.302 Hydrogen bonds: A:G.70, A:I.71, A:S.72, A:D.88, A:F.114, A:Y.172, A:K.240, A:C.242 Water bridges: A:D.88, A:Y.172 Salt bridges: A:D.73, A:D.88

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: Y.241, D.283, E.303 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.241, A:E.303 EDO.3: 7 residues within 4Å: Chain A: G.174, L.190, V.198, A.212, T.214, K.220, W.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.174, A:W.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Y. et al., Crystal structures of Kif2A complexed with WDR5 reveal the structural plasticity of WIN-S7 sites. Acta Biochim.Biophys.Sin. (2025)

Release Date

2025-05-21

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

WD repeat-containing protein 5

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