SMTL ID : 9j22.1

structure of human urea transport protein slc14A1 with urea

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

15 x URE: UREA(Non-functional Binders)

URE.1: 5 residues within 4Å: Chain A: L.285, W.286, V.324, A.327 Ligands: URE.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.285 URE.2: 7 residues within 4Å: Chain A: L.285, W.286, N.289, A.320, G.323, V.324 Ligands: URE.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.285, A:N.289, A:A.320 URE.3: 6 residues within 4Å: Chain A: F.136, Q.232, G.235, L.285, F.288 Ligands: URE.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.232, A:G.235 URE.4: 9 residues within 4Å: Chain A: L.132, F.180, Q.232, I.233, G.235, F.288, C.338, T.339 Ligands: URE.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.233, A:I.233, A:G.235 URE.5: 4 residues within 4Å: Chain A: Q.68, F.71, L.121, Y.124 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.68, A:Q.68 URE.12: 5 residues within 4Å: Chain B: L.285, W.286, V.324, A.327 Ligands: URE.13 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.285 URE.13: 7 residues within 4Å: Chain B: L.285, W.286, N.289, A.320, G.323, V.324 Ligands: URE.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.289, B:A.320 URE.14: 5 residues within 4Å: Chain B: Q.232, G.235, L.285, F.288 Ligands: URE.15 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.232, B:Q.232, B:G.235 URE.15: 10 residues within 4Å: Chain B: L.128, L.132, F.180, Q.232, I.233, G.235, F.288, C.338, T.339 Ligands: URE.14 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.233, B:I.233, B:G.235 URE.16: 4 residues within 4Å: Chain B: Q.68, F.71, L.121, Y.124 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.68, B:Q.68 URE.20: 5 residues within 4Å: Chain C: L.285, W.286, V.324, A.327 Ligands: URE.21 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:L.285 URE.21: 7 residues within 4Å: Chain C: L.285, W.286, N.289, A.320, G.323, V.324 Ligands: URE.20 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:L.285, C:N.289, C:A.320 URE.22: 5 residues within 4Å: Chain C: Q.232, G.235, L.285, F.288 Ligands: URE.23 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.232, C:Q.232, C:G.235 URE.23: 10 residues within 4Å: Chain C: L.128, L.132, F.180, Q.232, I.233, G.235, F.288, C.338, T.339 Ligands: URE.22 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:I.233, C:I.233, C:G.235 URE.24: 4 residues within 4Å: Chain C: Q.68, F.71, L.121, Y.124 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.68, C:Q.68

12 x PLM: PALMITIC ACID(Non-covalent)

PLM.6: 10 residues within 4Å: Chain A: F.160, M.167, M.182, M.186 Chain B: L.168, L.322, F.329, L.344, L.348, I.351 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.160, A:M.186, B:L.322, B:F.329, B:F.329, B:L.348, B:I.351 PLM.7: 12 residues within 4Å: Chain A: S.273, L.274, Y.321 Chain C: W.145, L.148, P.149, A.152, Y.187, A.190, F.197, F.198 Ligands: PLM.11 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:W.145, C:P.149, C:A.152, C:A.190, C:F.198, A:L.274, A:Y.321, A:Y.321, A:Y.321 PLM.8: 5 residues within 4Å: Chain A: L.310, Y.321 Chain C: L.109, M.155, T.156 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:Y.321, C:M.155 PLM.9: 9 residues within 4Å: Chain A: L.322, F.329, L.344, L.347, L.348, I.351 Chain C: F.160, M.186, S.189 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:F.329, A:L.344, A:L.347, A:L.348, A:I.351, C:F.160 PLM.10: 11 residues within 4Å: Chain A: W.145, L.148, P.149, A.152, M.186, Y.187, A.190, F.197, F.198 Chain B: S.273, Y.321 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.145, A:L.148, A:P.149, A:A.152, A:Y.187, A:A.190, A:F.197, A:F.198, B:Y.321, B:Y.321 PLM.11: 5 residues within 4Å: Chain A: W.214, L.272, S.273, Y.321 Ligands: PLM.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.214 PLM.17: 11 residues within 4Å: Chain B: W.145, L.148, P.149, A.152, M.186, Y.187, A.190, F.197, F.198 Chain C: S.273, Y.321 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:W.145, B:L.148, B:P.149, B:A.152, B:Y.187, B:A.190, B:F.198, C:Y.321, C:Y.321, C:Y.321 PLM.18: 6 residues within 4Å: Chain A: F.197 Chain B: W.214, A.269, L.272, S.273, Y.321 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.197, A:F.197 PLM.19: 7 residues within 4Å: Chain A: A.152, M.155, T.156 Chain B: W.306, L.311, G.314, Y.321 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.311, B:Y.321, A:A.152 PLM.25: 8 residues within 4Å: Chain B: L.109, A.152, M.155, T.156, I.159 Chain C: L.310, G.314, Y.321 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:A.152, B:I.159, C:Y.321 PLM.26: 10 residues within 4Å: Chain B: F.160, M.182, M.186, S.189 Chain C: L.322, F.329, L.344, L.347, L.348, I.351 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain C Hydrophobic interactions: B:F.160, B:M.186, C:F.329, C:F.329, C:L.344, C:L.348, C:I.351 PLM.27: 5 residues within 4Å: Chain C: W.214, L.272, S.273, L.317, Y.321 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:W.214, C:W.214, C:L.317

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, D. et al., Structural basis of the bifunctionality of Marinobacter salinexigens ZYF650 T glucosylglycerol phosphorylase in glucosylglycerol catabolism. J.Biol.Chem. (2025)

Release Date

2025-09-03

Peptides

Urea transporter 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Urea transporter 1