SMTL ID : 9j3e.1

Cryo-EM structure of TMexCD1-TOprJ1 in complex with 1-(1-naphthylmethyl)piperazine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-6-3-mer

Ligands

3 x 01: 1-(naphthalen-1-ylmethyl)piperazine

01.1: 6 residues within 4Å: Chain J: F.136, I.139, F.180, Y.571, F.613, F.626 6 PLIP interactions: 6 interactions with chain J Hydrophobic interactions: J:F.136, J:I.139, J:Y.571, J:F.626 pi-Stacking: J:F.626, J:F.626 01.2: 6 residues within 4Å: Chain K: F.136, I.139, F.180, Y.571, F.613, F.626 5 PLIP interactions: 5 interactions with chain K Hydrophobic interactions: K:F.136, K:I.139, K:Y.571, K:F.626, K:F.626 01.3: 6 residues within 4Å: Chain L: F.136, I.139, F.180, Y.571, F.613, F.626 5 PLIP interactions: 5 interactions with chain L Hydrophobic interactions: L:F.136, L:I.139, L:Y.571, L:F.626, L:F.626

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, Y. et al., Cryo-EM structure of TMexCD1-TOprJ1. To Be Published

Release Date

2025-08-13

Peptides

RND efflux system, OprJ-like protein: ABC
RND efflux system, MexC-like protein: DEFGHI
Efflux pump membrane transporter: JKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
K

K
J

L
L

Membrane

We predict this structure to be a membrane protein.
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RND efflux system, OprJ-like protein

RND efflux system, MexC-like protein

Efflux pump membrane transporter

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