SMTL ID : 9j3p.4 (4 other biounits)

Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION

ZN.1: 2 residues within 4Å: Chain A: A.360, H.361 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.361

2 x SO4: SULFATE ION

SO4.2: 4 residues within 4Å: Chain A: T.144, R.145, W.163, Q.167 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.145, A:W.163, A:Q.167 Water bridges: A:R.121 Salt bridges: A:R.145 SO4.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL

PG0.4: 1 residues within 4Å: Chain A: R.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chistyakov, D.V. et al., Zinc-mediated mechanism of neurodegeneration in glaucoma: a role of pigment epithelium-derived factor. To Be Published

Release Date

2025-06-18

Peptides

Pigment epithelium-derived factor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Pigment epithelium-derived factor

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