SMTL ID : 9j62.1

Cryo-EM structure of Bat SARS-like coronavirus Khosta-2 spike protein in complex with human ACE2 (local refined)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.35, T.37, Q.322 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.35, A:Q.322 NAG.2: 3 residues within 4Å: Chain A: N.72, L.73, T.74 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.73 NAG.4: 2 residues within 4Å: Chain A: N.304, M.305 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain B: D.21, F.24, N.25, V.49 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.356, H.360, E.384 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.356, A:H.360, A:E.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pan, X.Q. et al., Structural basis of receptor recognition by Khosta-1/Khosta-2 spike proteins. To Be Published

Release Date

2025-08-20

Peptides

Processed angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Processed angiotensin-converting enzyme 2

Spike glycoprotein