SMTL ID : 9j7v.1

Human G6PC1 in apo state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

8 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

POV.1: 13 residues within 4Å: Chain A: M.5, F.75, L.79, S.115, P.116, H.179, Q.180, V.182, A.183, S.187, V.191, T.194, F.195 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.75, A:L.79, A:P.116, A:P.116, A:V.182, A:A.183, A:V.191, A:F.195 Hydrogen bonds: A:S.115, A:S.115, A:Q.180 Salt bridges: A:H.179 POV.2: 3 residues within 4Å: Chain A: F.11, S.15, C.167 No protein-ligand interaction detected (PLIP) POV.3: 3 residues within 4Å: Chain A: V.7, L.8, F.11 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.8, A:F.11, A:F.11 POV.4: 1 residues within 4Å: Chain A: I.201 No protein-ligand interaction detected (PLIP) POV.5: 4 residues within 4Å: Chain A: F.217, I.221, F.258, V.324 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.217, A:I.221, A:V.324 POV.6: 1 residues within 4Å: Chain A: W.50 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.50 POV.7: 5 residues within 4Å: Chain A: V.35, D.38, R.40, N.41, V.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.41 Salt bridges: A:R.40 POV.8: 2 residues within 4Å: Chain A: H.307, V.308 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.307, A:H.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xia, Z. et al., Structural insights into glucose-6-phosphate recognition and hydrolysis by human G6PC1. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-02-05

Peptides

Glucose-6-phosphatase catalytic subunit 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Glucose-6-phosphatase catalytic subunit 1