SMTL ID : 9j98.1

Open structure of human XPR1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x 8PE: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate(Non-covalent)

8PE.1: 16 residues within 4Å: Chain A: L.278, L.285, T.289, L.305, N.306, S.309, N.310, L.311, Y.352, M.355, S.370, W.373, L.374, L.403, I.406, L.410 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.278, A:L.285, A:Y.352, A:L.374, A:L.403, A:I.406, A:L.410 Hydrogen bonds: A:L.311 8PE.3: 16 residues within 4Å: Chain B: L.278, L.285, T.289, L.305, N.306, S.309, N.310, L.311, Y.352, M.355, S.370, W.373, L.374, L.403, I.406, L.410 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.278, B:L.285, B:Y.352, B:L.374, B:L.403, B:I.406, B:L.410 Hydrogen bonds: B:L.311

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 3 residues within 4Å: Chain A: Y.553, F.605, F.609 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.553, A:F.605, A:F.609 CLR.4: 3 residues within 4Å: Chain B: Y.553, F.605, F.609 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.553, B:F.605, B:F.609

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Structural basis of phosphate export by human XPR1. Cell Res. (2025)

Release Date

2025-03-12

Peptides

Solute carrier family 53 member 1,Green fluorescent protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Solute carrier family 53 member 1,Green fluorescent protein

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