SMTL ID : 9j9l.1

artificial mononuclear Zn-bound metalloprotein 1 (M1:Zn)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-trimer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.82, H.102, D.132 Ligands: BCN.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.82, A:H.102, A:D.132 ZN.3: 4 residues within 4Å: Chain B: H.82, H.102, D.132 Ligands: BCN.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.82, B:H.102, B:D.132 ZN.5: 4 residues within 4Å: Chain C: H.82, H.102, D.132 Ligands: BCN.6 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.82, C:H.102, C:D.132

3 x BCN: BICINE(Non-covalent)

BCN.2: 10 residues within 4Å: Chain A: H.82, H.102, Y.106, D.113, A.123, S.125, G.131, D.132 Chain B: E.71 Ligands: ZN.1 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.71, A:D.113, A:D.132 Salt bridges: A:D.132 BCN.4: 10 residues within 4Å: Chain B: H.82, H.102, Y.106, D.113, A.123, S.125, G.131, D.132 Chain C: E.71 Ligands: ZN.3 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:D.113, B:D.132, C:E.71 Salt bridges: B:D.132 BCN.6: 10 residues within 4Å: Chain A: E.71 Chain C: H.82, H.102, Y.106, D.113, A.123, S.125, G.131, D.132 Ligands: ZN.5 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:E.71, C:D.113, C:D.132 Salt bridges: C:D.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeong, W.J. et al., Metal-Installer: A protein designer tool to create metal-binding sites. To Be Published

Release Date

2025-07-02

Peptides

Outer membrane porin F: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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Outer membrane porin F

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