SMTL ID : 9jad.1

GMPK in complex with GMP and K+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 3 residues within 4Å: Chain A: S.38, D.102 Ligands: 5GP.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.38, A:D.102, A:D.102, H2O.4, H2O.5

1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.2: 19 residues within 4Å: Chain A: S.14, K.18, S.38, R.42, R.45, Y.54, E.73, A.75, F.77, Y.82, G.83, T.84, D.102, V.103, D.104, G.107, R.149 Ligands: K.1, ACT.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.14, A:K.18, A:K.18, A:S.38, A:Y.54, A:Y.82, A:D.104 Water bridges: A:R.45, A:R.45, A:R.45 Salt bridges: A:R.42, A:R.45, A:E.73, A:D.104, A:R.149

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 8 residues within 4Å: Chain A: G.12, P.13, S.14, F.77, D.104, A.152, A.153 Ligands: 5GP.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.77, A:A.152 Hydrogen bonds: A:S.14 Water bridges: A:L.105 Salt bridges: A:K.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., Comprehensive profiling of the catalytic conformations of human Guanylate kinase. To Be Published

Release Date

2025-09-03

Peptides

Guanylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Guanylate kinase

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