SMTL ID : 9jcl.1

ADP-bound purinergic receptor 1 with L266P mutant in complex with miniGs/q

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain E: L.5, Q.11, Y.71, Y.72, T.76, R.89, R.156, T.162, C.163, Y.164, D.165, T.166, N.244, R.248, Q.252, N.260, Y.264, Y.267, R.271 20 PLIP interactions: 20 interactions with chain E Hydrogen bonds: E:Q.11, E:Q.11, E:Y.71, E:Y.72, E:T.76, E:R.156, E:T.162, E:T.162, E:C.163, E:D.165, E:T.166, E:N.244, E:N.244, E:N.260 Salt bridges: E:R.89, E:R.248, E:R.271, E:R.271 pi-Stacking: E:Y.264 pi-Cation interactions: E:R.248

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 9 residues within 4Å: Chain E: W.44, F.52, N.53, L.56, L.60, I.91, I.130, V.134, W.137 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:W.44, E:F.52, E:L.56, E:L.60, E:I.91, E:V.134, E:W.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gu, Q.C. et al., Cryo-EM map and model for human purinergic receptor P2Y1 with single mutation L266P. To Be Published

Release Date

2025-09-10

Peptides

GNAS complex locus: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nanobody 35: D
P2Y purinoceptor 1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
N

E
R

Membrane

We predict this structure to be a membrane protein.
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GNAS complex locus

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody 35

P2Y purinoceptor 1

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