SMTL ID : 9jeb.2 (1 other biounit)

Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody scFv N1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain B: G.7, F.10, N.11, V.35 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.10, B:V.35 Hydrogen bonds: B:N.11 Water bridges: B:G.7, B:V.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, N. et al., Mining antibody functionality via AI-guided structural landscape profiling. To Be Published

Release Date

2025-09-03

Peptides

N1 scFv: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

N1 scFv

Spike protein S1

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