SMTL ID : 9jf2.1 (1 other biounit)

Crystal structure of GABARAPL1 in complex with ATG16L1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: Y.65, F.66, R.69, P.76 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.76 MPD.2: 9 residues within 4Å: Chain A: V.61, G.62, Y.65, L.80, F.81, F.82, I.88, P.89, T.91 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.65, A:F.81, A:F.82, A:T.91 Hydrogen bonds: A:F.82 Water bridges: A:P.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gong, X.Y., Molecular bases of the interactions of ATG16L1 with FIP200 and ATG8 family proteins. To Be Published

Release Date

2025-09-10

Peptides

Gamma-aminobutyric acid receptor-associated protein-like 1: A
Autophagy-related protein 16-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Gamma-aminobutyric acid receptor-associated protein-like 1

Autophagy-related protein 16-1

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