SMTL ID : 9jh3.1

small ligand bound APLNR-Gi complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 01: (3~{S})-5-methyl-3-[[1-pentan-3-yl-2-(thiophen-2-ylmethyl)benzimidazol-5-yl]carbonylamino]hexanoic acid

01.1: 10 residues within 4Å: Chain C: Y.35, W.85, I.109, F.110, Y.264, Y.271, M.288, F.291, T.295, Y.299 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:Y.35, C:W.85, C:I.109, C:F.110, C:Y.271, C:Y.271, C:F.291, C:F.291, C:F.291, C:Y.299 Hydrogen bonds: C:Y.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, C. et al., Ligand recognition and G protein coupling of APLNR. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-04-23

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Apelin receptor: C
ScFv16: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
R

D
S

E
Y

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Apelin receptor

ScFv16

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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