SMTL ID : 9jhy.1

3-Hydroxybutyryl-CoA dehydrogenase mutant (S117A) with acetoacetyl CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

2 x CAA: ACETOACETYL-COENZYME A(Covalent)

CAA.1: 20 residues within 4Å: Chain C: L.52, K.55, K.57, I.58, A.118, H.137, F.138, F.139, N.140, R.144, M.145, N.187, L.190, P.222, M.223, L.228, I.232 Chain F: G.218, A.219, N.220 11 PLIP interactions: 10 interactions with chain C, 1 interactions with chain F Hydrophobic interactions: C:F.139 Hydrogen bonds: C:N.140, C:N.140, C:R.144, C:N.187, F:N.220 Salt bridges: C:K.55, C:K.57, C:R.144 pi-Cation interactions: C:R.144, C:R.144 CAA.2: 20 residues within 4Å: Chain C: G.218, A.219, N.220 Chain F: L.52, K.55, K.57, I.58, A.118, H.137, F.138, F.139, N.140, R.144, M.145, N.187, L.190, P.222, M.223, L.228, I.232 11 PLIP interactions: 10 interactions with chain F, 1 interactions with chain C Hydrophobic interactions: F:F.139 Hydrogen bonds: F:N.140, F:N.140, F:R.144, F:N.187, C:N.220 Salt bridges: F:K.55, F:K.57, F:R.144 pi-Cation interactions: F:R.144, F:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Structural Insights and Catalytic Mechanism of 3-Hydroxybutyryl-CoA Dehydrogenase from Faecalibacterium Prausnitzii A2-165. Int J Mol Sci (2024)

Release Date

2024-11-06

Peptides

3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

C
B

D
C

E
A

F
B

3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein