SMTL ID : 9ji1.1

CYP105A1 complexed with flufenamic acid (FLF)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: F.95, I.96, H.103, R.107, I.159, L.240, L.241, A.244, G.245, T.248, T.249, M.252, I.290, A.291, A.294, R.297, A.347, F.348, G.349, V.352, H.353, C.355, L.356, G.357, A.361 Ligands: FLF.3 24 PLIP interactions: 24 interactions with chain A, Hydrophobic interactions: A:F.95, A:F.95, A:I.96, A:I.159, A:L.240, A:L.241, A:A.244, A:T.248, A:I.290, A:A.291, A:A.294, A:F.348, A:L.356, A:A.361 Water bridges: A:R.73, A:R.73, A:A.294 Salt bridges: A:H.103, A:R.107, A:R.297, A:H.353, A:H.353 pi-Stacking: A:F.348 Metal complexes: A:C.355

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 4 residues within 4Å: Chain A: H.57, E.58, R.61, H.344 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.57, A:E.58 Water bridges: A:E.58, A:R.61, A:R.61, A:R.61, A:H.344

1 x FLF: 2-[[3-(TRIFLUOROMETHYL)PHENYL]AMINO] BENZOIC ACID(Non-covalent)

FLF.3: 12 residues within 4Å: Chain A: R.73, I.96, M.239, L.240, I.243, A.244, T.248, A.291, A.294, I.396 Ligands: HEM.1, EDO.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.243, A:I.243, A:I.243, A:T.248, A:I.396 Salt bridges: A:R.73

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: R.84, I.293 Ligands: FLF.3 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: D.35, P.37, G.38, K.56 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.35, A:G.38 EDO.6: 6 residues within 4Å: Chain A: D.75, N.77, V.298, A.299, T.300, G.313 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.77, A:N.77, A:A.299, A:G.313 EDO.7: 3 residues within 4Å: Chain A: H.263, E.265, Q.266 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.263, A:E.265, A:Q.266, A:Q.266 EDO.8: 3 residues within 4Å: Chain A: Y.24, D.262, H.263 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.24, A:D.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takita, T. et al., Structure-Function Analysis of Streptomyces griseolus CYP105A1 in the Metabolism of Nonsteroidal Anti-inflammatory Drugs. Biochemistry (2025)

Release Date

2025-04-23

Peptides

Vitamin D3 dihydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 dihydroxylase

Related Entries With Identical Sequence