SMTL ID : 9jip.1

CYP105A1 R84A complexed with flufenamic acid (FLF)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: F.95, I.96, H.103, R.107, F.114, L.240, L.241, A.244, G.245, T.248, T.249, M.252, I.290, A.291, A.294, R.297, A.347, F.348, G.349, V.352, H.353, C.355, L.356, G.357, A.361 Ligands: FLF.2 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:F.95, A:F.95, A:I.96, A:F.114, A:L.240, A:L.241, A:L.241, A:A.244, A:I.290, A:A.291, A:F.348, A:L.356, A:A.361 Water bridges: A:R.73, A:R.297 Salt bridges: A:H.103, A:R.107, A:R.297, A:H.353 pi-Stacking: A:F.348 Metal complexes: A:C.355

1 x FLF: 2-[[3-(TRIFLUOROMETHYL)PHENYL]AMINO] BENZOIC ACID(Non-covalent)

FLF.2: 11 residues within 4Å: Chain A: R.73, I.96, M.239, L.240, I.243, A.244, T.248, A.291, A.294, I.396 Ligands: HEM.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.243, A:I.243, A:I.243, A:T.248, A:I.396 Salt bridges: A:R.73

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: H.57, R.61, H.344 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.57 EDO.4: 2 residues within 4Å: Chain A: A.225, N.226 No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain A: E.282, R.362 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.343, A:R.362 EDO.6: 3 residues within 4Å: Chain A: A.197, G.198, D.201 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.232 EDO.7: 6 residues within 4Å: Chain A: L.138, R.375, W.406, H.407, H.408, H.409 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.406, A:H.409, A:H.409 EDO.8: 3 residues within 4Å: Chain A: A.268, R.271, A.272 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.268, A:R.271 EDO.9: 2 residues within 4Å: Chain A: R.343 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.343

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takita, T. et al., Structure-Function Analysis of Streptomyces griseolus CYP105A1 in the Metabolism of Nonsteroidal Anti-inflammatory Drugs. Biochemistry (2025)

Release Date

2025-04-23

Peptides

Vitamin D3 dihydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 dihydroxylase

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