SMTL ID : 9jj6.1

BtHKU5-CoV-2-441 Spike RBD domain binding to hACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 4 residues within 4Å: Chain A: F.163, N.192 Chain B: N.72, T.74 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.192, B:N.72, B:N.72, B:T.74 NAG.2: 1 residues within 4Å: Chain B: N.35 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.35 NAG.3: 3 residues within 4Å: Chain A: G.114 Chain B: V.298, N.304 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.304, A:G.114 NAG.4: 2 residues within 4Å: Chain B: S.402, N.528 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.528 NAG.5: 2 residues within 4Å: Chain B: N.136, S.262 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.136, B:S.262 NAG.6: 2 residues within 4Å: Chain B: Q.63, N.85 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, J. et al., Bat-infecting merbecovirus HKU5-CoV lineage 2 can use human ACE2 as a cell entry receptor. Cell (2025)

Release Date

2025-03-12

Peptides

BtHKU5-CoV-2-441 Spike RBD domain: A
Processed angiotensin-converting enzyme 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

BtHKU5-CoV-2-441 Spike RBD domain

Processed angiotensin-converting enzyme 2