SMTL ID : 9jjx.1 (1 other biounit)

Truncated RNF112, GDP-bound form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: E.47, K.48, R.49, R.50, G.51, K.52, S.53, F.54, F.84, E.121, R.186, D.187, H.235, P.236, I.240, F.255 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.49, A:R.50, A:G.51, A:K.52, A:S.53, A:S.53, A:F.54, A:E.121, A:E.121, A:R.186 Salt bridges: A:K.52, A:D.187 pi-Stacking: A:F.54

1 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.2: 6 residues within 4Å: Chain A: Y.189, W.194, F.231, L.232, S.258, S.261 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.194 Hydrogen bonds: A:Y.189, A:L.232, A:S.258, A:S.261 Salt bridges: A:K.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhong, Y.T. et al., Structural and functional characterization of the brain-specific dynamin superfamily member RNF112. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-04-23

Peptides

LOC432253 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LOC432253 protein

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