SMTL ID : 9jm0.1

retron Ec86-effector fiber

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

1 x NCA: NICOTINAMIDE(Non-covalent)

NCA.1: 9 residues within 4Å: Chain J: P.64, F.68, D.69, L.72, L.83, L.87, E.106, F.110 Ligands: AR6.2 5 PLIP interactions: 5 interactions with chain J Hydrophobic interactions: J:F.68, J:L.87, J:F.110 Hydrogen bonds: J:D.69 pi-Stacking: J:F.68

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Covalent)

AR6.2: 18 residues within 4Å: Chain J: C.35, G.36, P.64, S.100, P.101, G.102, S.103, E.106 Chain T: P.98, F.104, Q.124, F.128, K.131, S.133, F.134, I.135, N.136 Ligands: NCA.1 11 PLIP interactions: 6 interactions with chain J, 5 interactions with chain T Hydrogen bonds: J:G.36, J:G.36, J:S.100, J:S.100, J:G.102, J:S.103, T:P.98, T:Q.124, T:S.133, T:F.134 pi-Stacking: T:F.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., DNA methylation activates retron Ec86 filaments for antiphage defense. Cell Rep (2024)

Release Date

2024-12-18

Peptides

Retron Ec86 reverse transcriptase: AFKP
Retron Ec86 putative ribosyltransferase/DNA-binding protein: BJLT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
B

K
K

P
P

B
C

J
J

L
L

T
T

Retron Ec86 reverse transcriptase

Retron Ec86 putative ribosyltransferase/DNA-binding protein

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