SMTL ID : 9jpu.1

CryoEM structure of mouse RAG SEC-PHD

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-3-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.600, G.601, E.962 Chain E: G.15 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.600 CA.3: 3 residues within 4Å: Chain C: D.600, E.962 Chain F: G.14 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.600, C:D.600, C:E.962

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.727, C.730, H.937, H.942 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.727, A:C.730, A:H.937, A:H.942 ZN.4: 4 residues within 4Å: Chain C: C.727, C.730, H.937, H.942 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.727, C:C.730, C:H.937, C:H.942 ZN.5: 5 residues within 4Å: Chain I: C.419, C.423, V.425, H.455, C.458 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.419, I:C.423, I:H.455, I:C.458 ZN.6: 5 residues within 4Å: Chain I: C.446, H.452, Y.477, C.478, H.481 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.446, I:H.452, I:C.478, I:H.481

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., CryoEM structure of mouse RAG SEC-PHD. To Be Published

Release Date

2025-07-23

Peptides

V(D)J recombination-activating protein 1: AC
V(D)J recombination-activating protein 2: BDI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

I
E

V(D)J recombination-activating protein 1

V(D)J recombination-activating protein 2

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