SMTL ID : 9jqg.2 (1 other biounit)

Crystal structure of rice DWARF14 in complex with Cyclo(L-Leu-L-Pro)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: D.132, Y.133, H.134, S.225, V.226, Y.229 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.134, A:H.134 GOL.2: 4 residues within 4Å: Chain A: D.74, L.106, R.110, V.203 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.106, A:R.110 GOL.3: 5 residues within 4Å: Chain A: M.149, G.150, A.151, N.152, Y.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.153 Water bridges: A:N.152

1 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.4: 4 residues within 4Å: Chain A: P.41, Y.42, R.45, R.263 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.42 Hydrogen bonds: A:R.45, A:R.263, A:R.263

1 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.5: 5 residues within 4Å: Chain A: S.98, F.127, V.195, S.221, H.248 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.127 Hydrogen bonds: A:S.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Root microbiota regulates tiller number in rice. Cell (2025)

Release Date

2025-05-21

Peptides

Strigolactone esterase D14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Strigolactone esterase D14

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