SMTL ID : 9jqk.1 (1 other biounit)

Ebola VP30 and its inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-dimer

Ligands

2 x 01: 2-[(~{E})-heptadec-10-enyl]-6-oxidanyl-benzoic acid

01.1: 5 residues within 4Å: Chain A: W.120, D.121, S.124 Ligands: CL.3, CL.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.124 01.2: 7 residues within 4Å: Chain A: V.100, R.103, F.112, A.115, Q.118, Q.119 Ligands: CL.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.100, A:F.112, A:A.115 Hydrogen bonds: A:Q.119 Water bridges: A:R.103, A:R.103

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: Q.119, W.120 Ligands: 01.1, 01.2 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: D.121 Ligands: 01.1 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain B: D.54 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, C. et al., Ginkgolic acid inhibits Ebola virus transcription and replication by disrupting the interaction between nucleoprotein and VP30 protein. Antiviral Res. (2025)

Release Date

2025-04-23

Peptides

Transcriptional activator VP30: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

Transcriptional activator VP30

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