SMTL ID : 9juu.1

X-ray crystal structure of Y16515 in CBP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x 01: (5~{S})-1-(3-chloranyl-4-methoxy-phenyl)-5-[4-(3-methyl-1,2-benzoxazol-5-yl)-1-[(2~{R})-2-morpholin-4-ylpropyl]imidazol-2-yl]pyrrolidin-2-one

01.1: 12 residues within 4Å: Chain A: P.42, L.45, P.46, V.51, L.56, I.58, Y.61, Y.103, N.104, R.109, V.110, F.113 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.46, A:V.51, A:L.56, A:L.56, A:I.58, A:V.110 Hydrogen bonds: A:N.104 Water bridges: A:Y.61, A:Y.61

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: P.23, D.79, T.80, G.81 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.79

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: L.102, Y.103, N.104, R.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, J.K. et al., Discovery of 5-imidazole-3-methylbenz[d]isoxazole derivatives as potent and selective CBP/p300 bromodomain inhibitors for the treatment of acute myeloid leukemia. Acta Pharmacol.Sin. (2025)

Release Date

2025-03-12

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein

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