SMTL ID : 9jw1.1

Cryo-EM structure of Human RNF213

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: G.1629, V.1630, G.1631, K.1632, S.1633, L.1634, E.1732, G.1787, M.1788, D.1789, E.1792, E.1796, W.1846, S.1847, R.1850, D.2138, S.2208 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.1629, A:V.1630, A:G.1631, A:K.1632, A:S.1633, A:L.1634, A:G.1787, A:D.1789, A:D.1789, A:S.2208 Salt bridges: A:K.1632, A:K.1632, A:K.2133 pi-Stacking: A:W.1846, A:W.1846

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: S.1633, D.1691, E.1732, D.2138 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.1732

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, X. et al., Shigella effector IpaH1.4 subverts host E3 ligase RNF213 to evade antibacterial immunity. Nat Commun (2025)

Release Date

2025-05-07

Peptides

Ring finger protein 213: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ring finger protein 213