SMTL ID : 9jyt.1

Crystal structure of the PIN1 and fragment 1 complex.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x PE8: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL(Non-covalent)

PE8.1: 12 residues within 4Å: Chain A: Y.23, N.30, A.31, S.32, Q.33, W.34, I.93, K.97, E.145, M.146, S.147, G.148 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.32, A:K.97, A:M.146 Water bridges: A:S.32, A:S.32

1 x 01: Idramantone

01.2: 9 residues within 4Å: Chain A: H.59, L.61, L.122, M.130, Q.131, F.134, S.154, H.157 Ligands: SO4.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.122, A:Q.131, A:F.134 Hydrogen bonds: A:Q.131, A:S.154

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: K.63, R.68, R.69, S.154 Ligands: 01.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.69 Water bridges: A:K.63 Salt bridges: A:K.63, A:R.68, A:R.69 SO4.4: 2 residues within 4Å: Chain A: R.80, L.88 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.74, A:Q.75, A:R.80, A:R.80 Salt bridges: A:R.80

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: T.143, R.161 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, Q. et al., Uncovering druggable hotspots on Pin1 via X-ray crystallographic fragment screening. Eur.J.Med.Chem. (2025)

Release Date

2025-08-27

Peptides

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

Related Entries With Identical Sequence