SMTL ID : 9k0j.1

Crystal structure of FGFR4 kinase domain with 43b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x 01: ~{N}-[5-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-1~{H}-indazol-3-yl]-2-fluoranyl-6-(propanoylamino)benzamide

01.1: 15 residues within 4Å: Chain A: L.31, E.33, V.39, R.41, T.57, A.59, E.109, C.110, A.111, A.112, G.114, N.115, R.174, L.177, D.188 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.39, A:R.41, A:T.57 Hydrogen bonds: A:R.41, A:E.109, A:A.111, A:A.111, A:G.114, A:N.115 Halogen bonds: A:L.31, A:D.188

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.174, T.204, N.206, R.208 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.204, A:T.204, A:N.206, A:N.206 Water bridges: A:N.115 Salt bridges: A:R.174 SO4.3: 4 residues within 4Å: Chain A: R.121, R.124, G.245, S.246 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.246 Water bridges: A:R.121, A:R.121 Salt bridges: A:R.121, A:R.124 SO4.4: 3 residues within 4Å: Chain A: R.265, H.285, A.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.265, A:A.286 Salt bridges: A:H.285 SO4.5: 4 residues within 4Å: Chain A: A.192, R.193, G.194, V.195 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.193, A:G.194, A:V.195 Water bridges: A:K.70, A:K.70 SO4.6: 4 residues within 4Å: Chain A: K.113, E.180, D.181, N.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.180, A:D.181 Salt bridges: A:K.113

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.7: 1 residues within 4Å: Chain A: R.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.136 TRS.8: 4 residues within 4Å: Chain A: R.117, E.118, R.121, N.206 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.117, A:E.118, A:R.121, A:N.206 Water bridges: A:E.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X.J. et al., Crystal structure of FGFR4 kinase domain with 43b. To Be Published

Release Date

2025-10-22

Peptides

Fibroblast growth factor receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 4

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