SMTL ID : 9k2v.1

Cyanophage A4 pre-ejectosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.40 Å

Oligo State

hetero-10-10-10-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain U: H.665, D.669, H.748 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:H.665, U:D.669, U:D.669 ZN.2: 3 residues within 4Å: Chain W: H.665, D.669, H.748 3 PLIP interactions: 3 interactions with chain W Metal complexes: W:H.665, W:D.669, W:D.669 ZN.3: 3 residues within 4Å: Chain Y: H.665, D.669, H.748 3 PLIP interactions: 3 interactions with chain Y Metal complexes: Y:H.665, Y:D.669, Y:D.669 ZN.4: 3 residues within 4Å: Chain 0: H.665, D.669, H.748 3 PLIP interactions: 3 interactions with chain 0 Metal complexes: 0:H.665, 0:D.669, 0:D.669 ZN.5: 3 residues within 4Å: Chain 2: H.665, D.669, H.748 4 PLIP interactions: 4 interactions with chain 2 Metal complexes: 2:H.665, 2:H.665, 2:D.669, 2:D.669

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hou, P. et al., Cryo-EM structure of cyanopodophage A4 reveals a pentameric pre-ejectosome in the double-stabilized capsid. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-04-09

Peptides

Portal protein: ABCDEFGHIJ
Internal virion protein: KLMNOPQRST
Internal protein: UVWXYZ0123

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
M

C
O

D
G

E
I

F
F

G
H

H
J

I
L

J
N

K
V

L
W

M
X

N
Y

O
Z

P
v

Q
w

R
x

S
y

T
z

U
E

V
d

W
A

X
e

Y
B

Z
a

0
C

1
b

2
D

3
c

Portal protein

Internal virion protein

Internal protein

Related Entries With Identical Sequence