SMTL ID : 9k6u.1

Pentraxin Domain of PTX3 Octamer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.47, S.68, Y.69 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.69 NAG.2: 2 residues within 4Å: Chain B: N.47, Y.69 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain C: N.47, Y.69, K.82 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain D: N.47, Y.69 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Y.69 NAG.5: 2 residues within 4Å: Chain E: N.47, Y.69 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain F: N.47, Y.69 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.47 NAG.7: 2 residues within 4Å: Chain G: N.47, Y.69 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.47 NAG.8: 3 residues within 4Å: Chain H: N.47, Y.69, K.82 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, H.H. et al., Pentraxin Domain of PTX3 Octamer. To Be Published

Release Date

2025-10-22

Peptides

Pentraxin-related protein PTX3: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
D

D
C

E
E

F
H

G
G

H
F

Pentraxin-related protein PTX3