SMTL ID : 9k93.1

Cryo-EM structure of human signal peptide peptidase like 2A (SPPL2a) in complex with L685,458

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.60 Å

Oligo State

monomer

Ligands

1 x FTO: ~{tert}-butyl ~{N}-[(2~{S},3~{R},5~{R})-6-[[(2~{S})-1-[[(2~{S})-1-azanyl-1-oxidanylidene-3-phenyl-propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-3-oxidanyl-6-oxidanylidene-1-phenyl-5-(phenylmethyl)hexan-2-yl]carbamate(Non-covalent)

FTO.1: 17 residues within 4Å: Chain A: L.347, D.351, M.369, A.373, V.385, V.386, S.406, I.407, L.408, G.409, G.411, D.412, V.415, F.452, L.455, Q.462, L.465 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.347, A:A.373, A:V.386, A:I.407, A:I.407, A:L.408, A:V.415, A:F.452, A:L.455, A:L.465 Hydrogen bonds: A:D.351, A:I.407, A:I.407, A:G.409, A:F.410, A:G.411, A:Q.462, A:Q.462

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, R. et al., Structural insights into human signal peptide peptidase. To Be Published

Release Date

2025-10-29

Peptides

Signal peptide peptidase-like 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Signal peptide peptidase-like 2A

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