SMTL ID : 9ki1.1

Baseplate structure of Escherichia phage Mu

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-3-12-3-6-3-9-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain 5: S.189 Chain 6: S.189 Chain 7: S.189 1 PLIP interactions: 1 interactions with chain 7 Metal complexes: 7:S.189

1 x FE: FE (III) ION(Non-covalent)

FE.2: 6 residues within 4Å: Chain 5: H.183, H.185 Chain 6: H.183, H.185 Chain 7: H.183, H.185 5 PLIP interactions: 2 interactions with chain 5, 1 interactions with chain 7, 2 interactions with chain 6 Metal complexes: 5:H.183, 5:H.185, 7:H.183, 6:H.183, 6:H.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, J. et al., In situ structures of the contractile nanomachine myophage Mu in both its extended and contracted states. J.Virol. (2025)

Release Date

2025-02-12

Peptides

DNA circularization protein N: Aqrstu
Tail sheath protein: BCDvwx
Tail tube protein: EFGHIJ
Baseplate protein gp46: KLMNOP
Baseplate hub protein gp44: QX4
Baseplate protein gp47: RSTUVWYZ0123
Baseplate puncturing device gp45: 567
Baseplate protein gp48: 89abcd
Probable tape measure protein: efg
Tail fiber protein S: hijklmnop

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

q
s

r
t

s
u

t
v

u
w

B
1

C
2

D
3

v
x

w
y

x
z

E
4

F
5

G
6

H
7

I
8

J
9

K
A

L
B

M
C

N
D

O
E

P
F

Q
G

X
N

4
U

R
H

S
I

T
J

U
K

V
L

W
M

Y
O

Z
P

0
Q

1
R

2
S

3
T

5
V

6
W

7
X

8
a

9
b

a
c

b
d

c
e

d
f

e
g

f
h

g
i

h
j

i
k

j
l

k
m

l
n

m
o

n
p

o
q

p
r

DNA circularization protein N

Tail sheath protein

Tail tube protein

Baseplate protein gp46

Baseplate hub protein gp44

Baseplate protein gp47

Baseplate puncturing device gp45

Baseplate protein gp48

Probable tape measure protein

Tail fiber protein S

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