SMTL ID : 9kk6.1

Cryo-EM structure of vanadate-trapped atABCB19 in lipid nanodisc

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x VO4: VANADATE ION(Non-covalent)

VO4.1: 13 residues within 4Å: Chain A: S.402, G.403, K.406, S.407, Q.448, E.529, H.560, S.1150, G.1151, G.1152, A.1178 Ligands: ADP.2, MG.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.403, A:Q.448, A:G.1151, A:G.1152 VO4.3: 8 residues within 4Å: Chain A: S.505, G.506, G.507, K.1051, S.1052, Q.1093 Ligands: ADP.4, MG.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.506, A:G.507

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 18 residues within 4Å: Chain A: Y.374, S.376, R.377, I.382, G.401, G.403, S.404, K.406, S.407, T.408, E.529, R.880, Q.1148, L.1149, S.1150, Q.1153 Ligands: VO4.1, MG.5 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.377, A:G.401, A:G.403, A:S.404, A:K.406, A:S.407, A:T.408, A:R.880, A:Q.1153 pi-Stacking: A:Y.374, A:Y.374 ADP.4: 17 residues within 4Å: Chain A: Q.503, S.505, Q.508, D.780, Y.1019, S.1021, R.1022, V.1027, G.1048, S.1049, G.1050, K.1051, S.1052, S.1053, Y.1062 Ligands: VO4.3, MG.6 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.508, A:Q.508, A:D.780, A:S.1049, A:G.1050, A:K.1051, A:S.1052, A:S.1053 pi-Stacking: A:Y.1019, A:Y.1019

2 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 5 residues within 4Å: Chain A: S.407, Q.448, E.529 Ligands: VO4.1, ADP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.407, A:E.529 MG.6: 4 residues within 4Å: Chain A: S.1052, Q.1093 Ligands: VO4.3, ADP.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.1052

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y., Cryo-EM structure of vanadate-trapped atABCB19 in lipid nanodisc. To Be Published

Release Date

2025-05-21

Peptides

ABC transporter B family member 19: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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ABC transporter B family member 19

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