- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-24-mer
- Ligands
- 144 x CD: CADMIUM ION(Non-covalent)
- 24 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 2 residues within 4Å:- Chain A: Q.6, N.7
Ligand excluded by PLIPSO4.19: 2 residues within 4Å:- Chain B: Q.6, N.7
Ligand excluded by PLIPSO4.31: 2 residues within 4Å:- Chain C: Q.6, N.7
Ligand excluded by PLIPSO4.43: 2 residues within 4Å:- Chain D: Q.6, N.7
Ligand excluded by PLIPSO4.55: 2 residues within 4Å:- Chain E: Q.6, N.7
Ligand excluded by PLIPSO4.67: 2 residues within 4Å:- Chain F: Q.6, N.7
Ligand excluded by PLIPSO4.79: 2 residues within 4Å:- Chain G: Q.6, N.7
Ligand excluded by PLIPSO4.91: 2 residues within 4Å:- Chain H: Q.6, N.7
Ligand excluded by PLIPSO4.103: 2 residues within 4Å:- Chain I: Q.6, N.7
Ligand excluded by PLIPSO4.115: 2 residues within 4Å:- Chain J: Q.6, N.7
Ligand excluded by PLIPSO4.127: 2 residues within 4Å:- Chain K: Q.6, N.7
Ligand excluded by PLIPSO4.139: 2 residues within 4Å:- Chain L: Q.6, N.7
Ligand excluded by PLIPSO4.151: 2 residues within 4Å:- Chain M: Q.6, N.7
Ligand excluded by PLIPSO4.163: 2 residues within 4Å:- Chain N: Q.6, N.7
Ligand excluded by PLIPSO4.175: 2 residues within 4Å:- Chain O: Q.6, N.7
Ligand excluded by PLIPSO4.187: 2 residues within 4Å:- Chain P: Q.6, N.7
Ligand excluded by PLIPSO4.199: 2 residues within 4Å:- Chain Q: Q.6, N.7
Ligand excluded by PLIPSO4.211: 2 residues within 4Å:- Chain R: Q.6, N.7
Ligand excluded by PLIPSO4.223: 2 residues within 4Å:- Chain S: Q.6, N.7
Ligand excluded by PLIPSO4.235: 2 residues within 4Å:- Chain T: Q.6, N.7
Ligand excluded by PLIPSO4.247: 2 residues within 4Å:- Chain U: Q.6, N.7
Ligand excluded by PLIPSO4.259: 2 residues within 4Å:- Chain V: Q.6, N.7
Ligand excluded by PLIPSO4.271: 2 residues within 4Å:- Chain W: Q.6, N.7
Ligand excluded by PLIPSO4.283: 2 residues within 4Å:- Chain X: Q.6, N.7
Ligand excluded by PLIP- 24 x CL: CHLORIDE ION(Non-functional Binders)
CL.8: 3 residues within 4Å:- Chain A: D.80
- Chain V: K.83
- Ligands: CD.4
Ligand excluded by PLIPCL.20: 3 residues within 4Å:- Chain B: D.80
- Chain W: K.83
- Ligands: CD.16
Ligand excluded by PLIPCL.32: 3 residues within 4Å:- Chain C: D.80
- Chain X: K.83
- Ligands: CD.28
Ligand excluded by PLIPCL.44: 3 residues within 4Å:- Chain D: D.80
- Chain U: K.83
- Ligands: CD.40
Ligand excluded by PLIPCL.56: 3 residues within 4Å:- Chain E: D.80
- Chain Q: K.83
- Ligands: CD.52
Ligand excluded by PLIPCL.68: 3 residues within 4Å:- Chain F: D.80
- Chain T: K.83
- Ligands: CD.64
Ligand excluded by PLIPCL.80: 3 residues within 4Å:- Chain G: D.80
- Chain S: K.83
- Ligands: CD.76
Ligand excluded by PLIPCL.92: 3 residues within 4Å:- Chain H: D.80
- Chain R: K.83
- Ligands: CD.88
Ligand excluded by PLIPCL.104: 3 residues within 4Å:- Chain I: D.80
- Chain P: K.83
- Ligands: CD.100
Ligand excluded by PLIPCL.116: 3 residues within 4Å:- Chain J: D.80
- Chain M: K.83
- Ligands: CD.112
Ligand excluded by PLIPCL.128: 3 residues within 4Å:- Chain K: D.80
- Chain N: K.83
- Ligands: CD.124
Ligand excluded by PLIPCL.140: 3 residues within 4Å:- Chain L: D.80
- Chain O: K.83
- Ligands: CD.136
Ligand excluded by PLIPCL.152: 3 residues within 4Å:- Chain J: K.83
- Chain M: D.80
- Ligands: CD.148
Ligand excluded by PLIPCL.164: 3 residues within 4Å:- Chain K: K.83
- Chain N: D.80
- Ligands: CD.160
Ligand excluded by PLIPCL.176: 3 residues within 4Å:- Chain L: K.83
- Chain O: D.80
- Ligands: CD.172
Ligand excluded by PLIPCL.188: 3 residues within 4Å:- Chain I: K.83
- Chain P: D.80
- Ligands: CD.184
Ligand excluded by PLIPCL.200: 3 residues within 4Å:- Chain E: K.83
- Chain Q: D.80
- Ligands: CD.196
Ligand excluded by PLIPCL.212: 3 residues within 4Å:- Chain H: K.83
- Chain R: D.80
- Ligands: CD.208
Ligand excluded by PLIPCL.224: 3 residues within 4Å:- Chain G: K.83
- Chain S: D.80
- Ligands: CD.220
Ligand excluded by PLIPCL.236: 3 residues within 4Å:- Chain F: K.83
- Chain T: D.80
- Ligands: CD.232
Ligand excluded by PLIPCL.248: 3 residues within 4Å:- Chain D: K.83
- Chain U: D.80
- Ligands: CD.244
Ligand excluded by PLIPCL.260: 3 residues within 4Å:- Chain A: K.83
- Chain V: D.80
- Ligands: CD.256
Ligand excluded by PLIPCL.272: 3 residues within 4Å:- Chain B: K.83
- Chain W: D.80
- Ligands: CD.268
Ligand excluded by PLIPCL.284: 3 residues within 4Å:- Chain C: K.83
- Chain X: D.80
- Ligands: CD.280
Ligand excluded by PLIP- 72 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 6 residues within 4Å:- Chain A: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.10: 6 residues within 4Å:- Chain A: Y.36, V.42, G.90, T.91, E.163
- Chain O: R.153
Ligand excluded by PLIPEDO.11: 6 residues within 4Å:- Chain A: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.21: 6 residues within 4Å:- Chain B: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.22: 6 residues within 4Å:- Chain B: Y.36, V.42, G.90, T.91, E.163
- Chain P: R.153
Ligand excluded by PLIPEDO.23: 6 residues within 4Å:- Chain B: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.33: 6 residues within 4Å:- Chain C: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.34: 6 residues within 4Å:- Chain C: Y.36, V.42, G.90, T.91, E.163
- Chain N: R.153
Ligand excluded by PLIPEDO.35: 6 residues within 4Å:- Chain C: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.45: 6 residues within 4Å:- Chain D: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.46: 6 residues within 4Å:- Chain D: Y.36, V.42, G.90, T.91, E.163
- Chain M: R.153
Ligand excluded by PLIPEDO.47: 6 residues within 4Å:- Chain D: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.57: 6 residues within 4Å:- Chain E: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.58: 6 residues within 4Å:- Chain E: Y.36, V.42, G.90, T.91, E.163
- Chain U: R.153
Ligand excluded by PLIPEDO.59: 6 residues within 4Å:- Chain E: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.69: 6 residues within 4Å:- Chain F: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.70: 6 residues within 4Å:- Chain F: Y.36, V.42, G.90, T.91, E.163
- Chain V: R.153
Ligand excluded by PLIPEDO.71: 6 residues within 4Å:- Chain F: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.81: 6 residues within 4Å:- Chain G: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.82: 6 residues within 4Å:- Chain G: Y.36, V.42, G.90, T.91, E.163
- Chain X: R.153
Ligand excluded by PLIPEDO.83: 6 residues within 4Å:- Chain G: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.93: 6 residues within 4Å:- Chain H: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.94: 6 residues within 4Å:- Chain H: Y.36, V.42, G.90, T.91, E.163
- Chain W: R.153
Ligand excluded by PLIPEDO.95: 6 residues within 4Å:- Chain H: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.105: 6 residues within 4Å:- Chain I: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.106: 6 residues within 4Å:- Chain I: Y.36, V.42, G.90, T.91, E.163
- Chain R: R.153
Ligand excluded by PLIPEDO.107: 6 residues within 4Å:- Chain I: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.117: 6 residues within 4Å:- Chain J: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.118: 6 residues within 4Å:- Chain J: Y.36, V.42, G.90, T.91, E.163
- Chain Q: R.153
Ligand excluded by PLIPEDO.119: 6 residues within 4Å:- Chain J: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.129: 6 residues within 4Å:- Chain K: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.130: 6 residues within 4Å:- Chain K: Y.36, V.42, G.90, T.91, E.163
- Chain S: R.153
Ligand excluded by PLIPEDO.131: 6 residues within 4Å:- Chain K: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.141: 6 residues within 4Å:- Chain L: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.142: 6 residues within 4Å:- Chain L: Y.36, V.42, G.90, T.91, E.163
- Chain T: R.153
Ligand excluded by PLIPEDO.143: 6 residues within 4Å:- Chain L: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.153: 6 residues within 4Å:- Chain M: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.154: 6 residues within 4Å:- Chain C: R.153
- Chain M: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.155: 6 residues within 4Å:- Chain M: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.165: 6 residues within 4Å:- Chain N: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.166: 6 residues within 4Å:- Chain D: R.153
- Chain N: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.167: 6 residues within 4Å:- Chain N: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.177: 6 residues within 4Å:- Chain O: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.178: 6 residues within 4Å:- Chain B: R.153
- Chain O: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.179: 6 residues within 4Å:- Chain O: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.189: 6 residues within 4Å:- Chain P: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.190: 6 residues within 4Å:- Chain A: R.153
- Chain P: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.191: 6 residues within 4Å:- Chain P: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.201: 6 residues within 4Å:- Chain Q: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.202: 6 residues within 4Å:- Chain I: R.153
- Chain Q: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.203: 6 residues within 4Å:- Chain Q: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.213: 6 residues within 4Å:- Chain R: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.214: 6 residues within 4Å:- Chain J: R.153
- Chain R: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.215: 6 residues within 4Å:- Chain R: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.225: 6 residues within 4Å:- Chain S: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.226: 6 residues within 4Å:- Chain L: R.153
- Chain S: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.227: 6 residues within 4Å:- Chain S: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.237: 6 residues within 4Å:- Chain T: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.238: 6 residues within 4Å:- Chain K: R.153
- Chain T: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.239: 6 residues within 4Å:- Chain T: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.249: 6 residues within 4Å:- Chain U: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.250: 6 residues within 4Å:- Chain F: R.153
- Chain U: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.251: 6 residues within 4Å:- Chain U: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.261: 6 residues within 4Å:- Chain V: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.262: 6 residues within 4Å:- Chain E: R.153
- Chain V: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.263: 6 residues within 4Å:- Chain V: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.273: 6 residues within 4Å:- Chain W: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.274: 6 residues within 4Å:- Chain G: R.153
- Chain W: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.275: 6 residues within 4Å:- Chain W: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIPEDO.285: 6 residues within 4Å:- Chain X: T.91, T.92, L.93, I.151, A.159, E.163
Ligand excluded by PLIPEDO.286: 6 residues within 4Å:- Chain H: R.153
- Chain X: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.287: 6 residues within 4Å:- Chain X: Y.23, F.57, K.58, F.133, E.136, E.137
Ligand excluded by PLIP- 24 x 01: Nile Red
01.12: 11 residues within 4Å:- Chain A: S.27, Y.28, F.56, F.59, F.60
- Chain V: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.264
16 PLIP interactions:9 interactions with chain A, 7 interactions with chain V- Hydrophobic interactions: A:Y.28, A:F.56, A:F.56, A:F.59, A:F.59, A:F.59, A:F.59, V:Y.28, V:F.56, V:F.56, V:L.81
- pi-Stacking: A:F.59, A:F.60, V:F.59, V:F.59, V:F.60
01.24: 11 residues within 4Å:- Chain B: S.27, Y.28, F.56, F.59, F.60
- Chain W: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.276
16 PLIP interactions:7 interactions with chain W, 9 interactions with chain B- Hydrophobic interactions: W:Y.28, W:F.56, W:F.56, W:L.81, B:Y.28, B:F.56, B:F.56, B:F.59, B:F.59, B:F.59, B:F.59
- pi-Stacking: W:F.59, W:F.59, W:F.60, B:F.59, B:F.60
01.36: 11 residues within 4Å:- Chain C: S.27, Y.28, F.56, F.59, F.60
- Chain X: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.288
16 PLIP interactions:9 interactions with chain C, 7 interactions with chain X- Hydrophobic interactions: C:Y.28, C:F.56, C:F.56, C:F.59, C:F.59, C:F.59, C:F.59, X:Y.28, X:F.56, X:F.56, X:L.81
- pi-Stacking: C:F.59, C:F.60, X:F.59, X:F.59, X:F.60
01.48: 11 residues within 4Å:- Chain D: S.27, Y.28, F.56, F.59, F.60
- Chain U: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.252
16 PLIP interactions:9 interactions with chain D, 7 interactions with chain U- Hydrophobic interactions: D:Y.28, D:F.56, D:F.56, D:F.59, D:F.59, D:F.59, D:F.59, U:Y.28, U:F.56, U:F.56, U:L.81
- pi-Stacking: D:F.59, D:F.60, U:F.59, U:F.59, U:F.60
01.60: 11 residues within 4Å:- Chain E: S.27, Y.28, F.56, F.59, F.60
- Chain Q: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.204
16 PLIP interactions:9 interactions with chain E, 7 interactions with chain Q- Hydrophobic interactions: E:Y.28, E:F.56, E:F.56, E:F.59, E:F.59, E:F.59, E:F.59, Q:Y.28, Q:F.56, Q:F.56, Q:L.81
- pi-Stacking: E:F.59, E:F.60, Q:F.59, Q:F.59, Q:F.60
01.72: 11 residues within 4Å:- Chain F: S.27, Y.28, F.56, F.59, F.60
- Chain T: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.240
16 PLIP interactions:9 interactions with chain F, 7 interactions with chain T- Hydrophobic interactions: F:Y.28, F:F.56, F:F.56, F:F.59, F:F.59, F:F.59, F:F.59, T:Y.28, T:F.56, T:F.56, T:L.81
- pi-Stacking: F:F.59, F:F.60, T:F.59, T:F.59, T:F.60
01.84: 11 residues within 4Å:- Chain G: S.27, Y.28, F.56, F.59, F.60
- Chain S: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.228
16 PLIP interactions:7 interactions with chain S, 9 interactions with chain G- Hydrophobic interactions: S:Y.28, S:F.56, S:F.56, S:L.81, G:Y.28, G:F.56, G:F.56, G:F.59, G:F.59, G:F.59, G:F.59
- pi-Stacking: S:F.59, S:F.59, S:F.60, G:F.59, G:F.60
01.96: 11 residues within 4Å:- Chain H: S.27, Y.28, F.56, F.59, F.60
- Chain R: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.216
16 PLIP interactions:9 interactions with chain H, 7 interactions with chain R- Hydrophobic interactions: H:Y.28, H:F.56, H:F.56, H:F.59, H:F.59, H:F.59, H:F.59, R:Y.28, R:F.56, R:F.56, R:L.81
- pi-Stacking: H:F.59, H:F.60, R:F.59, R:F.59, R:F.60
01.108: 11 residues within 4Å:- Chain I: S.27, Y.28, F.56, F.59, F.60
- Chain P: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.192
16 PLIP interactions:9 interactions with chain I, 7 interactions with chain P- Hydrophobic interactions: I:Y.28, I:F.56, I:F.56, I:F.59, I:F.59, I:F.59, I:F.59, P:Y.28, P:F.56, P:F.56, P:L.81
- pi-Stacking: I:F.59, I:F.60, P:F.59, P:F.59, P:F.60
01.120: 11 residues within 4Å:- Chain J: S.27, Y.28, F.56, F.59, F.60
- Chain M: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.156
16 PLIP interactions:8 interactions with chain M, 8 interactions with chain J- Hydrophobic interactions: M:Y.28, M:F.56, M:F.56, M:L.81, J:Y.28, J:F.56, J:F.59, J:F.59, J:F.59, J:F.59
- Hydrogen bonds: M:S.27
- pi-Stacking: M:F.59, M:F.59, M:F.60, J:F.59, J:F.60
01.132: 11 residues within 4Å:- Chain K: S.27, Y.28, F.56, F.59, F.60
- Chain N: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.168
16 PLIP interactions:8 interactions with chain N, 8 interactions with chain K- Hydrophobic interactions: N:Y.28, N:F.56, N:F.56, N:L.81, K:Y.28, K:F.56, K:F.59, K:F.59, K:F.59, K:F.59
- Hydrogen bonds: N:S.27
- pi-Stacking: N:F.59, N:F.59, N:F.60, K:F.59, K:F.60
01.144: 11 residues within 4Å:- Chain L: S.27, Y.28, F.56, F.59, F.60
- Chain O: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.180
16 PLIP interactions:8 interactions with chain O, 8 interactions with chain L- Hydrophobic interactions: O:Y.28, O:F.56, O:F.56, O:L.81, L:Y.28, L:F.56, L:F.59, L:F.59, L:F.59, L:F.59
- Hydrogen bonds: O:S.27
- pi-Stacking: O:F.59, O:F.59, O:F.60, L:F.59, L:F.60
01.156: 11 residues within 4Å:- Chain J: S.27, Y.28, F.56, F.59, L.81
- Chain M: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.120
16 PLIP interactions:8 interactions with chain M, 8 interactions with chain J- Hydrophobic interactions: M:Y.28, M:F.56, M:F.59, M:F.59, M:F.59, M:F.59, J:Y.28, J:F.56, J:F.56, J:L.81
- pi-Stacking: M:F.59, M:F.60, J:F.59, J:F.59, J:F.60
- Hydrogen bonds: J:S.27
01.168: 11 residues within 4Å:- Chain K: S.27, Y.28, F.56, F.59, L.81
- Chain N: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.132
16 PLIP interactions:8 interactions with chain N, 8 interactions with chain K- Hydrophobic interactions: N:Y.28, N:F.56, N:F.59, N:F.59, N:F.59, N:F.59, K:Y.28, K:F.56, K:F.56, K:L.81
- pi-Stacking: N:F.59, N:F.60, K:F.59, K:F.59, K:F.60
- Hydrogen bonds: K:S.27
01.180: 11 residues within 4Å:- Chain L: S.27, Y.28, F.56, F.59, L.81
- Chain O: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.144
16 PLIP interactions:8 interactions with chain L, 8 interactions with chain O- Hydrophobic interactions: L:Y.28, L:F.56, L:F.56, L:L.81, O:Y.28, O:F.56, O:F.59, O:F.59, O:F.59, O:F.59
- Hydrogen bonds: L:S.27
- pi-Stacking: L:F.59, L:F.59, L:F.60, O:F.59, O:F.60
01.192: 11 residues within 4Å:- Chain I: S.27, Y.28, F.56, F.59, L.81
- Chain P: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.108
16 PLIP interactions:7 interactions with chain I, 9 interactions with chain P- Hydrophobic interactions: I:Y.28, I:F.56, I:F.56, I:L.81, P:Y.28, P:F.56, P:F.56, P:F.59, P:F.59, P:F.59, P:F.59
- pi-Stacking: I:F.59, I:F.59, I:F.60, P:F.59, P:F.60
01.204: 11 residues within 4Å:- Chain E: S.27, Y.28, F.56, F.59, L.81
- Chain Q: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.60
16 PLIP interactions:7 interactions with chain E, 9 interactions with chain Q- Hydrophobic interactions: E:Y.28, E:F.56, E:F.56, E:L.81, Q:Y.28, Q:F.56, Q:F.56, Q:F.59, Q:F.59, Q:F.59, Q:F.59
- pi-Stacking: E:F.59, E:F.59, E:F.60, Q:F.59, Q:F.60
01.216: 11 residues within 4Å:- Chain H: S.27, Y.28, F.56, F.59, L.81
- Chain R: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.96
16 PLIP interactions:9 interactions with chain R, 7 interactions with chain H- Hydrophobic interactions: R:Y.28, R:F.56, R:F.56, R:F.59, R:F.59, R:F.59, R:F.59, H:Y.28, H:F.56, H:F.56, H:L.81
- pi-Stacking: R:F.59, R:F.60, H:F.59, H:F.59, H:F.60
01.228: 11 residues within 4Å:- Chain G: S.27, Y.28, F.56, F.59, L.81
- Chain S: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.84
16 PLIP interactions:9 interactions with chain S, 7 interactions with chain G- Hydrophobic interactions: S:Y.28, S:F.56, S:F.56, S:F.59, S:F.59, S:F.59, S:F.59, G:Y.28, G:F.56, G:F.56, G:L.81
- pi-Stacking: S:F.59, S:F.60, G:F.59, G:F.59, G:F.60
01.240: 11 residues within 4Å:- Chain F: S.27, Y.28, F.56, F.59, L.81
- Chain T: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.72
16 PLIP interactions:9 interactions with chain T, 7 interactions with chain F- Hydrophobic interactions: T:Y.28, T:F.56, T:F.56, T:F.59, T:F.59, T:F.59, T:F.59, F:Y.28, F:F.56, F:F.56, F:L.81
- pi-Stacking: T:F.59, T:F.60, F:F.59, F:F.59, F:F.60
01.252: 11 residues within 4Å:- Chain D: S.27, Y.28, F.56, F.59, L.81
- Chain U: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.48
16 PLIP interactions:7 interactions with chain D, 9 interactions with chain U- Hydrophobic interactions: D:Y.28, D:F.56, D:F.56, D:L.81, U:Y.28, U:F.56, U:F.56, U:F.59, U:F.59, U:F.59, U:F.59
- pi-Stacking: D:F.59, D:F.59, D:F.60, U:F.59, U:F.60
01.264: 11 residues within 4Å:- Chain A: S.27, Y.28, F.56, F.59, L.81
- Chain V: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.12
16 PLIP interactions:9 interactions with chain V, 7 interactions with chain A- Hydrophobic interactions: V:Y.28, V:F.56, V:F.56, V:F.59, V:F.59, V:F.59, V:F.59, A:Y.28, A:F.56, A:F.56, A:L.81
- pi-Stacking: V:F.59, V:F.60, A:F.59, A:F.59, A:F.60
01.276: 11 residues within 4Å:- Chain B: S.27, Y.28, F.56, F.59, L.81
- Chain W: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.24
16 PLIP interactions:9 interactions with chain W, 7 interactions with chain B- Hydrophobic interactions: W:Y.28, W:F.56, W:F.56, W:F.59, W:F.59, W:F.59, W:F.59, B:Y.28, B:F.56, B:F.56, B:L.81
- pi-Stacking: W:F.59, W:F.60, B:F.59, B:F.59, B:F.60
01.288: 11 residues within 4Å:- Chain C: S.27, Y.28, F.56, F.59, L.81
- Chain X: S.27, Y.28, F.56, F.59, F.60
- Ligands: 01.36
16 PLIP interactions:9 interactions with chain X, 7 interactions with chain C- Hydrophobic interactions: X:Y.28, X:F.56, X:F.56, X:F.59, X:F.59, X:F.59, X:F.59, C:Y.28, C:F.56, C:F.56, C:L.81
- pi-Stacking: X:F.59, X:F.60, C:F.59, C:F.59, C:F.60
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hishikawa, Y. et al., Design of Aromatic Interaction Networks in a Protein Cage Modulated by Fluorescent Ligand Binding. Adv Sci (2025)
- Release Date
- 2025-03-05
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-24-mer
- Ligands
- 144 x CD: CADMIUM ION(Non-covalent)
- 24 x SO4: SULFATE ION(Non-functional Binders)
- 24 x CL: CHLORIDE ION(Non-functional Binders)
- 72 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 24 x 01: Nile Red
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hishikawa, Y. et al., Design of Aromatic Interaction Networks in a Protein Cage Modulated by Fluorescent Ligand Binding. Adv Sci (2025)
- Release Date
- 2025-03-05
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A