SMTL ID : 9kle.1

Crystal structure of Horse spleen L-ferritin mutant (R52F/E56F/R59F/E63F) with Nile Red

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-24-mer

Ligands

96 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: D.80 Ligands: CL.6 Ligand excluded by PLIP CD.2: 11 residues within 4Å: Chain A: D.127, S.131 Chain E: D.127, S.131 Chain I: D.127, S.131 Ligands: CD.4, CD.34, CD.36, CD.66, CD.68 Ligand excluded by PLIP CD.3: 7 residues within 4Å: Chain A: E.130 Chain I: E.130 Ligands: CD.4, CD.35, CD.36, CD.67, CD.68 Ligand excluded by PLIP CD.4: 11 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.2, CD.3, CD.34, CD.35, CD.36, CD.66, CD.67, CD.68 Ligand excluded by PLIP CD.9: 2 residues within 4Å: Chain B: D.80 Ligands: CL.14 Ligand excluded by PLIP CD.10: 11 residues within 4Å: Chain B: D.127, S.131 Chain G: D.127, S.131 Chain L: D.127, S.131 Ligands: CD.12, CD.50, CD.52, CD.90, CD.92 Ligand excluded by PLIP CD.11: 7 residues within 4Å: Chain B: E.130 Chain L: E.130 Ligands: CD.12, CD.51, CD.52, CD.91, CD.92 Ligand excluded by PLIP CD.12: 11 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.10, CD.11, CD.50, CD.51, CD.52, CD.90, CD.91, CD.92 Ligand excluded by PLIP CD.17: 2 residues within 4Å: Chain C: D.80 Ligands: CL.22 Ligand excluded by PLIP CD.18: 11 residues within 4Å: Chain C: D.127, S.131 Chain H: D.127, S.131 Chain J: D.127, S.131 Ligands: CD.20, CD.58, CD.60, CD.74, CD.76 Ligand excluded by PLIP CD.19: 7 residues within 4Å: Chain C: E.130 Chain J: E.130 Ligands: CD.20, CD.59, CD.60, CD.75, CD.76 Ligand excluded by PLIP CD.20: 11 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.18, CD.19, CD.58, CD.59, CD.60, CD.74, CD.75, CD.76 Ligand excluded by PLIP CD.25: 2 residues within 4Å: Chain D: D.80 Ligands: CL.30 Ligand excluded by PLIP CD.26: 11 residues within 4Å: Chain D: D.127, S.131 Chain F: D.127, S.131 Chain K: D.127, S.131 Ligands: CD.28, CD.42, CD.44, CD.82, CD.84 Ligand excluded by PLIP CD.27: 7 residues within 4Å: Chain D: E.130 Chain K: E.130 Ligands: CD.28, CD.43, CD.44, CD.83, CD.84 Ligand excluded by PLIP CD.28: 11 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.26, CD.27, CD.42, CD.43, CD.44, CD.82, CD.83, CD.84 Ligand excluded by PLIP CD.33: 2 residues within 4Å: Chain E: D.80 Ligands: CL.38 Ligand excluded by PLIP CD.34: 11 residues within 4Å: Chain A: D.127, S.131 Chain E: D.127, S.131 Chain I: D.127, S.131 Ligands: CD.2, CD.4, CD.36, CD.66, CD.68 Ligand excluded by PLIP CD.35: 7 residues within 4Å: Chain A: E.130 Chain E: E.130 Ligands: CD.3, CD.4, CD.36, CD.67, CD.68 Ligand excluded by PLIP CD.36: 11 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.2, CD.3, CD.4, CD.34, CD.35, CD.66, CD.67, CD.68 Ligand excluded by PLIP CD.41: 2 residues within 4Å: Chain F: D.80 Ligands: CL.46 Ligand excluded by PLIP CD.42: 11 residues within 4Å: Chain D: D.127, S.131 Chain F: D.127, S.131 Chain K: D.127, S.131 Ligands: CD.26, CD.28, CD.44, CD.82, CD.84 Ligand excluded by PLIP CD.43: 7 residues within 4Å: Chain D: E.130 Chain F: E.130 Ligands: CD.27, CD.28, CD.44, CD.83, CD.84 Ligand excluded by PLIP CD.44: 11 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.26, CD.27, CD.28, CD.42, CD.43, CD.82, CD.83, CD.84 Ligand excluded by PLIP CD.49: 2 residues within 4Å: Chain G: D.80 Ligands: CL.54 Ligand excluded by PLIP CD.50: 11 residues within 4Å: Chain B: D.127, S.131 Chain G: D.127, S.131 Chain L: D.127, S.131 Ligands: CD.10, CD.12, CD.52, CD.90, CD.92 Ligand excluded by PLIP CD.51: 7 residues within 4Å: Chain B: E.130 Chain G: E.130 Ligands: CD.11, CD.12, CD.52, CD.91, CD.92 Ligand excluded by PLIP CD.52: 11 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.10, CD.11, CD.12, CD.50, CD.51, CD.90, CD.91, CD.92 Ligand excluded by PLIP CD.57: 2 residues within 4Å: Chain H: D.80 Ligands: CL.62 Ligand excluded by PLIP CD.58: 11 residues within 4Å: Chain C: D.127, S.131 Chain H: D.127, S.131 Chain J: D.127, S.131 Ligands: CD.18, CD.20, CD.60, CD.74, CD.76 Ligand excluded by PLIP CD.59: 7 residues within 4Å: Chain C: E.130 Chain H: E.130 Ligands: CD.19, CD.20, CD.60, CD.75, CD.76 Ligand excluded by PLIP CD.60: 11 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.18, CD.19, CD.20, CD.58, CD.59, CD.74, CD.75, CD.76 Ligand excluded by PLIP CD.65: 2 residues within 4Å: Chain I: D.80 Ligands: CL.70 Ligand excluded by PLIP CD.66: 11 residues within 4Å: Chain A: D.127, S.131 Chain E: D.127, S.131 Chain I: D.127, S.131 Ligands: CD.2, CD.4, CD.34, CD.36, CD.68 Ligand excluded by PLIP CD.67: 7 residues within 4Å: Chain E: E.130 Chain I: E.130 Ligands: CD.3, CD.4, CD.35, CD.36, CD.68 Ligand excluded by PLIP CD.68: 11 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.2, CD.3, CD.4, CD.34, CD.35, CD.36, CD.66, CD.67 Ligand excluded by PLIP CD.73: 2 residues within 4Å: Chain J: D.80 Ligands: CL.78 Ligand excluded by PLIP CD.74: 11 residues within 4Å: Chain C: D.127, S.131 Chain H: D.127, S.131 Chain J: D.127, S.131 Ligands: CD.18, CD.20, CD.58, CD.60, CD.76 Ligand excluded by PLIP CD.75: 7 residues within 4Å: Chain H: E.130 Chain J: E.130 Ligands: CD.19, CD.20, CD.59, CD.60, CD.76 Ligand excluded by PLIP CD.76: 11 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.18, CD.19, CD.20, CD.58, CD.59, CD.60, CD.74, CD.75 Ligand excluded by PLIP CD.81: 2 residues within 4Å: Chain K: D.80 Ligands: CL.86 Ligand excluded by PLIP CD.82: 11 residues within 4Å: Chain D: D.127, S.131 Chain F: D.127, S.131 Chain K: D.127, S.131 Ligands: CD.26, CD.28, CD.42, CD.44, CD.84 Ligand excluded by PLIP CD.83: 7 residues within 4Å: Chain F: E.130 Chain K: E.130 Ligands: CD.27, CD.28, CD.43, CD.44, CD.84 Ligand excluded by PLIP CD.84: 11 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.26, CD.27, CD.28, CD.42, CD.43, CD.44, CD.82, CD.83 Ligand excluded by PLIP CD.89: 2 residues within 4Å: Chain L: D.80 Ligands: CL.94 Ligand excluded by PLIP CD.90: 11 residues within 4Å: Chain B: D.127, S.131 Chain G: D.127, S.131 Chain L: D.127, S.131 Ligands: CD.10, CD.12, CD.50, CD.52, CD.92 Ligand excluded by PLIP CD.91: 7 residues within 4Å: Chain G: E.130 Chain L: E.130 Ligands: CD.11, CD.12, CD.51, CD.52, CD.92 Ligand excluded by PLIP CD.92: 11 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.10, CD.11, CD.12, CD.50, CD.51, CD.52, CD.90, CD.91 Ligand excluded by PLIP CD.97: 2 residues within 4Å: Chain M: D.80 Ligands: CL.102 Ligand excluded by PLIP CD.98: 11 residues within 4Å: Chain M: D.127, S.131 Chain Q: D.127, S.131 Chain U: D.127, S.131 Ligands: CD.100, CD.130, CD.132, CD.162, CD.164 Ligand excluded by PLIP CD.99: 7 residues within 4Å: Chain M: E.130 Chain U: E.130 Ligands: CD.100, CD.131, CD.132, CD.163, CD.164 Ligand excluded by PLIP CD.100: 11 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.98, CD.99, CD.130, CD.131, CD.132, CD.162, CD.163, CD.164 Ligand excluded by PLIP CD.105: 2 residues within 4Å: Chain N: D.80 Ligands: CL.110 Ligand excluded by PLIP CD.106: 11 residues within 4Å: Chain N: D.127, S.131 Chain S: D.127, S.131 Chain X: D.127, S.131 Ligands: CD.108, CD.146, CD.148, CD.186, CD.188 Ligand excluded by PLIP CD.107: 7 residues within 4Å: Chain N: E.130 Chain X: E.130 Ligands: CD.108, CD.147, CD.148, CD.187, CD.188 Ligand excluded by PLIP CD.108: 11 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.106, CD.107, CD.146, CD.147, CD.148, CD.186, CD.187, CD.188 Ligand excluded by PLIP CD.113: 2 residues within 4Å: Chain O: D.80 Ligands: CL.118 Ligand excluded by PLIP CD.114: 11 residues within 4Å: Chain O: D.127, S.131 Chain T: D.127, S.131 Chain V: D.127, S.131 Ligands: CD.116, CD.154, CD.156, CD.170, CD.172 Ligand excluded by PLIP CD.115: 7 residues within 4Å: Chain O: E.130 Chain V: E.130 Ligands: CD.116, CD.155, CD.156, CD.171, CD.172 Ligand excluded by PLIP CD.116: 11 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.114, CD.115, CD.154, CD.155, CD.156, CD.170, CD.171, CD.172 Ligand excluded by PLIP CD.121: 2 residues within 4Å: Chain P: D.80 Ligands: CL.126 Ligand excluded by PLIP CD.122: 11 residues within 4Å: Chain P: D.127, S.131 Chain R: D.127, S.131 Chain W: D.127, S.131 Ligands: CD.124, CD.138, CD.140, CD.178, CD.180 Ligand excluded by PLIP CD.123: 7 residues within 4Å: Chain P: E.130 Chain W: E.130 Ligands: CD.124, CD.139, CD.140, CD.179, CD.180 Ligand excluded by PLIP CD.124: 11 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.122, CD.123, CD.138, CD.139, CD.140, CD.178, CD.179, CD.180 Ligand excluded by PLIP CD.129: 2 residues within 4Å: Chain Q: D.80 Ligands: CL.134 Ligand excluded by PLIP CD.130: 11 residues within 4Å: Chain M: D.127, S.131 Chain Q: D.127, S.131 Chain U: D.127, S.131 Ligands: CD.98, CD.100, CD.132, CD.162, CD.164 Ligand excluded by PLIP CD.131: 7 residues within 4Å: Chain M: E.130 Chain Q: E.130 Ligands: CD.99, CD.100, CD.132, CD.163, CD.164 Ligand excluded by PLIP CD.132: 11 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.98, CD.99, CD.100, CD.130, CD.131, CD.162, CD.163, CD.164 Ligand excluded by PLIP CD.137: 2 residues within 4Å: Chain R: D.80 Ligands: CL.142 Ligand excluded by PLIP CD.138: 11 residues within 4Å: Chain P: D.127, S.131 Chain R: D.127, S.131 Chain W: D.127, S.131 Ligands: CD.122, CD.124, CD.140, CD.178, CD.180 Ligand excluded by PLIP CD.139: 7 residues within 4Å: Chain P: E.130 Chain R: E.130 Ligands: CD.123, CD.124, CD.140, CD.179, CD.180 Ligand excluded by PLIP CD.140: 11 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.122, CD.123, CD.124, CD.138, CD.139, CD.178, CD.179, CD.180 Ligand excluded by PLIP CD.145: 2 residues within 4Å: Chain S: D.80 Ligands: CL.150 Ligand excluded by PLIP CD.146: 11 residues within 4Å: Chain N: D.127, S.131 Chain S: D.127, S.131 Chain X: D.127, S.131 Ligands: CD.106, CD.108, CD.148, CD.186, CD.188 Ligand excluded by PLIP CD.147: 7 residues within 4Å: Chain N: E.130 Chain S: E.130 Ligands: CD.107, CD.108, CD.148, CD.187, CD.188 Ligand excluded by PLIP CD.148: 11 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.106, CD.107, CD.108, CD.146, CD.147, CD.186, CD.187, CD.188 Ligand excluded by PLIP CD.153: 2 residues within 4Å: Chain T: D.80 Ligands: CL.158 Ligand excluded by PLIP CD.154: 11 residues within 4Å: Chain O: D.127, S.131 Chain T: D.127, S.131 Chain V: D.127, S.131 Ligands: CD.114, CD.116, CD.156, CD.170, CD.172 Ligand excluded by PLIP CD.155: 7 residues within 4Å: Chain O: E.130 Chain T: E.130 Ligands: CD.115, CD.116, CD.156, CD.171, CD.172 Ligand excluded by PLIP CD.156: 11 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.114, CD.115, CD.116, CD.154, CD.155, CD.170, CD.171, CD.172 Ligand excluded by PLIP CD.161: 2 residues within 4Å: Chain U: D.80 Ligands: CL.166 Ligand excluded by PLIP CD.162: 11 residues within 4Å: Chain M: D.127, S.131 Chain Q: D.127, S.131 Chain U: D.127, S.131 Ligands: CD.98, CD.100, CD.130, CD.132, CD.164 Ligand excluded by PLIP CD.163: 7 residues within 4Å: Chain Q: E.130 Chain U: E.130 Ligands: CD.99, CD.100, CD.131, CD.132, CD.164 Ligand excluded by PLIP CD.164: 11 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.98, CD.99, CD.100, CD.130, CD.131, CD.132, CD.162, CD.163 Ligand excluded by PLIP CD.169: 2 residues within 4Å: Chain V: D.80 Ligands: CL.174 Ligand excluded by PLIP CD.170: 11 residues within 4Å: Chain O: D.127, S.131 Chain T: D.127, S.131 Chain V: D.127, S.131 Ligands: CD.114, CD.116, CD.154, CD.156, CD.172 Ligand excluded by PLIP CD.171: 7 residues within 4Å: Chain T: E.130 Chain V: E.130 Ligands: CD.115, CD.116, CD.155, CD.156, CD.172 Ligand excluded by PLIP CD.172: 11 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.114, CD.115, CD.116, CD.154, CD.155, CD.156, CD.170, CD.171 Ligand excluded by PLIP CD.177: 2 residues within 4Å: Chain W: D.80 Ligands: CL.182 Ligand excluded by PLIP CD.178: 11 residues within 4Å: Chain P: D.127, S.131 Chain R: D.127, S.131 Chain W: D.127, S.131 Ligands: CD.122, CD.124, CD.138, CD.140, CD.180 Ligand excluded by PLIP CD.179: 7 residues within 4Å: Chain R: E.130 Chain W: E.130 Ligands: CD.123, CD.124, CD.139, CD.140, CD.180 Ligand excluded by PLIP CD.180: 11 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.122, CD.123, CD.124, CD.138, CD.139, CD.140, CD.178, CD.179 Ligand excluded by PLIP CD.185: 2 residues within 4Å: Chain X: D.80 Ligands: CL.190 Ligand excluded by PLIP CD.186: 11 residues within 4Å: Chain N: D.127, S.131 Chain S: D.127, S.131 Chain X: D.127, S.131 Ligands: CD.106, CD.108, CD.146, CD.148, CD.188 Ligand excluded by PLIP CD.187: 7 residues within 4Å: Chain S: E.130 Chain X: E.130 Ligands: CD.107, CD.108, CD.147, CD.148, CD.188 Ligand excluded by PLIP CD.188: 11 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.106, CD.107, CD.108, CD.146, CD.147, CD.148, CD.186, CD.187 Ligand excluded by PLIP

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: Q.6, N.7 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain B: Q.6, N.7 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain C: Q.6, N.7 Ligand excluded by PLIP SO4.29: 2 residues within 4Å: Chain D: Q.6, N.7 Ligand excluded by PLIP SO4.37: 2 residues within 4Å: Chain E: Q.6, N.7 Ligand excluded by PLIP SO4.45: 2 residues within 4Å: Chain F: Q.6, N.7 Ligand excluded by PLIP SO4.53: 2 residues within 4Å: Chain G: Q.6, N.7 Ligand excluded by PLIP SO4.61: 2 residues within 4Å: Chain H: Q.6, N.7 Ligand excluded by PLIP SO4.69: 2 residues within 4Å: Chain I: Q.6, N.7 Ligand excluded by PLIP SO4.77: 2 residues within 4Å: Chain J: Q.6, N.7 Ligand excluded by PLIP SO4.85: 2 residues within 4Å: Chain K: Q.6, N.7 Ligand excluded by PLIP SO4.93: 2 residues within 4Å: Chain L: Q.6, N.7 Ligand excluded by PLIP SO4.101: 2 residues within 4Å: Chain M: Q.6, N.7 Ligand excluded by PLIP SO4.109: 2 residues within 4Å: Chain N: Q.6, N.7 Ligand excluded by PLIP SO4.117: 2 residues within 4Å: Chain O: Q.6, N.7 Ligand excluded by PLIP SO4.125: 2 residues within 4Å: Chain P: Q.6, N.7 Ligand excluded by PLIP SO4.133: 2 residues within 4Å: Chain Q: Q.6, N.7 Ligand excluded by PLIP SO4.141: 2 residues within 4Å: Chain R: Q.6, N.7 Ligand excluded by PLIP SO4.149: 2 residues within 4Å: Chain S: Q.6, N.7 Ligand excluded by PLIP SO4.157: 2 residues within 4Å: Chain T: Q.6, N.7 Ligand excluded by PLIP SO4.165: 2 residues within 4Å: Chain U: Q.6, N.7 Ligand excluded by PLIP SO4.173: 2 residues within 4Å: Chain V: Q.6, N.7 Ligand excluded by PLIP SO4.181: 2 residues within 4Å: Chain W: Q.6, N.7 Ligand excluded by PLIP SO4.189: 2 residues within 4Å: Chain X: Q.6, N.7 Ligand excluded by PLIP

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: D.80 Chain V: K.83 Ligands: CD.1 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: D.80 Chain W: K.83 Ligands: CD.9 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain C: D.80 Chain X: K.83 Ligands: CD.17 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain D: D.80 Chain U: K.83 Ligands: CD.25 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain E: D.80 Chain Q: K.83 Ligands: CD.33 Ligand excluded by PLIP CL.46: 3 residues within 4Å: Chain F: D.80 Chain T: K.83 Ligands: CD.41 Ligand excluded by PLIP CL.54: 3 residues within 4Å: Chain G: D.80 Chain S: K.83 Ligands: CD.49 Ligand excluded by PLIP CL.62: 3 residues within 4Å: Chain H: D.80 Chain R: K.83 Ligands: CD.57 Ligand excluded by PLIP CL.70: 3 residues within 4Å: Chain I: D.80 Chain P: K.83 Ligands: CD.65 Ligand excluded by PLIP CL.78: 3 residues within 4Å: Chain J: D.80 Chain M: K.83 Ligands: CD.73 Ligand excluded by PLIP CL.86: 3 residues within 4Å: Chain K: D.80 Chain N: K.83 Ligands: CD.81 Ligand excluded by PLIP CL.94: 3 residues within 4Å: Chain L: D.80 Chain O: K.83 Ligands: CD.89 Ligand excluded by PLIP CL.102: 3 residues within 4Å: Chain J: K.83 Chain M: D.80 Ligands: CD.97 Ligand excluded by PLIP CL.110: 3 residues within 4Å: Chain K: K.83 Chain N: D.80 Ligands: CD.105 Ligand excluded by PLIP CL.118: 3 residues within 4Å: Chain L: K.83 Chain O: D.80 Ligands: CD.113 Ligand excluded by PLIP CL.126: 3 residues within 4Å: Chain I: K.83 Chain P: D.80 Ligands: CD.121 Ligand excluded by PLIP CL.134: 3 residues within 4Å: Chain E: K.83 Chain Q: D.80 Ligands: CD.129 Ligand excluded by PLIP CL.142: 3 residues within 4Å: Chain H: K.83 Chain R: D.80 Ligands: CD.137 Ligand excluded by PLIP CL.150: 3 residues within 4Å: Chain G: K.83 Chain S: D.80 Ligands: CD.145 Ligand excluded by PLIP CL.158: 3 residues within 4Å: Chain F: K.83 Chain T: D.80 Ligands: CD.153 Ligand excluded by PLIP CL.166: 3 residues within 4Å: Chain D: K.83 Chain U: D.80 Ligands: CD.161 Ligand excluded by PLIP CL.174: 3 residues within 4Å: Chain A: K.83 Chain V: D.80 Ligands: CD.169 Ligand excluded by PLIP CL.182: 3 residues within 4Å: Chain B: K.83 Chain W: D.80 Ligands: CD.177 Ligand excluded by PLIP CL.190: 3 residues within 4Å: Chain C: K.83 Chain X: D.80 Ligands: CD.185 Ligand excluded by PLIP

24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 7 residues within 4Å: Chain A: Y.36, D.41, V.42, G.90, T.91, E.163 Chain O: R.153 Ligand excluded by PLIP EDO.15: 7 residues within 4Å: Chain B: Y.36, D.41, V.42, G.90, T.91, E.163 Chain P: R.153 Ligand excluded by PLIP EDO.23: 7 residues within 4Å: Chain C: Y.36, D.41, V.42, G.90, T.91, E.163 Chain N: R.153 Ligand excluded by PLIP EDO.31: 7 residues within 4Å: Chain D: Y.36, D.41, V.42, G.90, T.91, E.163 Chain M: R.153 Ligand excluded by PLIP EDO.39: 7 residues within 4Å: Chain E: Y.36, D.41, V.42, G.90, T.91, E.163 Chain U: R.153 Ligand excluded by PLIP EDO.47: 7 residues within 4Å: Chain F: Y.36, D.41, V.42, G.90, T.91, E.163 Chain V: R.153 Ligand excluded by PLIP EDO.55: 7 residues within 4Å: Chain G: Y.36, D.41, V.42, G.90, T.91, E.163 Chain X: R.153 Ligand excluded by PLIP EDO.63: 7 residues within 4Å: Chain H: Y.36, D.41, V.42, G.90, T.91, E.163 Chain W: R.153 Ligand excluded by PLIP EDO.71: 7 residues within 4Å: Chain I: Y.36, D.41, V.42, G.90, T.91, E.163 Chain R: R.153 Ligand excluded by PLIP EDO.79: 7 residues within 4Å: Chain J: Y.36, D.41, V.42, G.90, T.91, E.163 Chain Q: R.153 Ligand excluded by PLIP EDO.87: 7 residues within 4Å: Chain K: Y.36, D.41, V.42, G.90, T.91, E.163 Chain S: R.153 Ligand excluded by PLIP EDO.95: 7 residues within 4Å: Chain L: Y.36, D.41, V.42, G.90, T.91, E.163 Chain T: R.153 Ligand excluded by PLIP EDO.103: 7 residues within 4Å: Chain C: R.153 Chain M: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.111: 7 residues within 4Å: Chain D: R.153 Chain N: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.119: 7 residues within 4Å: Chain B: R.153 Chain O: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.127: 7 residues within 4Å: Chain A: R.153 Chain P: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.135: 7 residues within 4Å: Chain I: R.153 Chain Q: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.143: 7 residues within 4Å: Chain J: R.153 Chain R: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.151: 7 residues within 4Å: Chain L: R.153 Chain S: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.159: 7 residues within 4Å: Chain K: R.153 Chain T: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.167: 7 residues within 4Å: Chain F: R.153 Chain U: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.175: 7 residues within 4Å: Chain E: R.153 Chain V: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.183: 7 residues within 4Å: Chain G: R.153 Chain W: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.191: 7 residues within 4Å: Chain H: R.153 Chain X: Y.36, D.41, V.42, G.90, T.91, E.163 Ligand excluded by PLIP

24 x 01: Nile Red

01.8: 8 residues within 4Å: Chain A: S.27, Y.28, F.59 Chain V: S.27, Y.28, F.56, F.59 Ligands: 01.176 8 PLIP interactions: 4 interactions with chain V, 4 interactions with chain A Hydrophobic interactions: V:Y.28, V:F.56, A:F.59, A:F.59, A:F.59 pi-Stacking: V:F.59, V:F.59, A:F.59 01.16: 8 residues within 4Å: Chain B: S.27, Y.28, F.59 Chain W: S.27, Y.28, F.56, F.59 Ligands: 01.184 8 PLIP interactions: 4 interactions with chain W, 4 interactions with chain B Hydrophobic interactions: W:Y.28, W:F.56, B:F.59, B:F.59, B:F.59 pi-Stacking: W:F.59, W:F.59, B:F.59 01.24: 8 residues within 4Å: Chain C: S.27, Y.28, F.59 Chain X: S.27, Y.28, F.56, F.59 Ligands: 01.192 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain X Hydrophobic interactions: C:F.59, C:F.59, C:F.59, X:Y.28, X:F.56 pi-Stacking: C:F.59, X:F.59, X:F.59 01.32: 8 residues within 4Å: Chain D: S.27, Y.28, F.59 Chain U: S.27, Y.28, F.56, F.59 Ligands: 01.168 8 PLIP interactions: 4 interactions with chain U, 4 interactions with chain D Hydrophobic interactions: U:Y.28, U:F.56, D:F.59, D:F.59, D:F.59 pi-Stacking: U:F.59, U:F.59, D:F.59 01.40: 8 residues within 4Å: Chain E: S.27, Y.28, F.59 Chain Q: S.27, Y.28, F.56, F.59 Ligands: 01.136 8 PLIP interactions: 4 interactions with chain Q, 4 interactions with chain E Hydrophobic interactions: Q:Y.28, Q:F.56, E:F.59, E:F.59, E:F.59 pi-Stacking: Q:F.59, Q:F.59, E:F.59 01.48: 8 residues within 4Å: Chain F: S.27, Y.28, F.59 Chain T: S.27, Y.28, F.56, F.59 Ligands: 01.160 8 PLIP interactions: 4 interactions with chain F, 4 interactions with chain T Hydrophobic interactions: F:F.59, F:F.59, F:F.59, T:Y.28, T:F.56 pi-Stacking: F:F.59, T:F.59, T:F.59 01.56: 8 residues within 4Å: Chain G: S.27, Y.28, F.59 Chain S: S.27, Y.28, F.56, F.59 Ligands: 01.152 8 PLIP interactions: 4 interactions with chain S, 4 interactions with chain G Hydrophobic interactions: S:Y.28, S:F.56, G:F.59, G:F.59, G:F.59 pi-Stacking: S:F.59, S:F.59, G:F.59 01.64: 8 residues within 4Å: Chain H: S.27, Y.28, F.59 Chain R: S.27, Y.28, F.56, F.59 Ligands: 01.144 8 PLIP interactions: 4 interactions with chain R, 4 interactions with chain H Hydrophobic interactions: R:Y.28, R:F.56, H:F.59, H:F.59, H:F.59 pi-Stacking: R:F.59, R:F.59, H:F.59 01.72: 8 residues within 4Å: Chain I: S.27, Y.28, F.59 Chain P: S.27, Y.28, F.56, F.59 Ligands: 01.128 8 PLIP interactions: 4 interactions with chain P, 4 interactions with chain I Hydrophobic interactions: P:Y.28, P:F.56, I:F.59, I:F.59, I:F.59 pi-Stacking: P:F.59, P:F.59, I:F.59 01.80: 8 residues within 4Å: Chain J: S.27, Y.28, F.59 Chain M: S.27, Y.28, F.56, F.59 Ligands: 01.104 8 PLIP interactions: 4 interactions with chain M, 4 interactions with chain J Hydrophobic interactions: M:Y.28, M:F.56, J:F.59, J:F.59, J:F.59 pi-Stacking: M:F.59, M:F.59, J:F.59 01.88: 8 residues within 4Å: Chain K: S.27, Y.28, F.59 Chain N: S.27, Y.28, F.56, F.59 Ligands: 01.112 8 PLIP interactions: 4 interactions with chain N, 4 interactions with chain K Hydrophobic interactions: N:Y.28, N:F.56, K:F.59, K:F.59, K:F.59 pi-Stacking: N:F.59, N:F.59, K:F.59 01.96: 8 residues within 4Å: Chain L: S.27, Y.28, F.59 Chain O: S.27, Y.28, F.56, F.59 Ligands: 01.120 8 PLIP interactions: 4 interactions with chain L, 4 interactions with chain O Hydrophobic interactions: L:F.59, L:F.59, L:F.59, O:Y.28, O:F.56 pi-Stacking: L:F.59, O:F.59, O:F.59 01.104: 8 residues within 4Å: Chain J: S.27, Y.28, F.56, F.59 Chain M: S.27, Y.28, F.59 Ligands: 01.80 8 PLIP interactions: 4 interactions with chain J, 4 interactions with chain M Hydrophobic interactions: J:Y.28, J:F.56, M:F.59, M:F.59, M:F.59 pi-Stacking: J:F.59, J:F.59, M:F.59 01.112: 8 residues within 4Å: Chain K: S.27, Y.28, F.56, F.59 Chain N: S.27, Y.28, F.59 Ligands: 01.88 8 PLIP interactions: 4 interactions with chain K, 4 interactions with chain N Hydrophobic interactions: K:Y.28, K:F.56, N:F.59, N:F.59, N:F.59 pi-Stacking: K:F.59, K:F.59, N:F.59 01.120: 8 residues within 4Å: Chain L: S.27, Y.28, F.56, F.59 Chain O: S.27, Y.28, F.59 Ligands: 01.96 8 PLIP interactions: 4 interactions with chain L, 4 interactions with chain O Hydrophobic interactions: L:Y.28, L:F.56, O:F.59, O:F.59, O:F.59 pi-Stacking: L:F.59, L:F.59, O:F.59 01.128: 8 residues within 4Å: Chain I: S.27, Y.28, F.56, F.59 Chain P: S.27, Y.28, F.59 Ligands: 01.72 8 PLIP interactions: 4 interactions with chain I, 4 interactions with chain P Hydrophobic interactions: I:Y.28, I:F.56, P:F.59, P:F.59, P:F.59 pi-Stacking: I:F.59, I:F.59, P:F.59 01.136: 8 residues within 4Å: Chain E: S.27, Y.28, F.56, F.59 Chain Q: S.27, Y.28, F.59 Ligands: 01.40 8 PLIP interactions: 4 interactions with chain E, 4 interactions with chain Q Hydrophobic interactions: E:Y.28, E:F.56, Q:F.59, Q:F.59, Q:F.59 pi-Stacking: E:F.59, E:F.59, Q:F.59 01.144: 8 residues within 4Å: Chain H: S.27, Y.28, F.56, F.59 Chain R: S.27, Y.28, F.59 Ligands: 01.64 8 PLIP interactions: 4 interactions with chain R, 4 interactions with chain H Hydrophobic interactions: R:F.59, R:F.59, R:F.59, H:Y.28, H:F.56 pi-Stacking: R:F.59, H:F.59, H:F.59 01.152: 8 residues within 4Å: Chain G: S.27, Y.28, F.56, F.59 Chain S: S.27, Y.28, F.59 Ligands: 01.56 8 PLIP interactions: 4 interactions with chain G, 4 interactions with chain S Hydrophobic interactions: G:Y.28, G:F.56, S:F.59, S:F.59, S:F.59 pi-Stacking: G:F.59, G:F.59, S:F.59 01.160: 8 residues within 4Å: Chain F: S.27, Y.28, F.56, F.59 Chain T: S.27, Y.28, F.59 Ligands: 01.48 8 PLIP interactions: 4 interactions with chain F, 4 interactions with chain T Hydrophobic interactions: F:Y.28, F:F.56, T:F.59, T:F.59, T:F.59 pi-Stacking: F:F.59, F:F.59, T:F.59 01.168: 8 residues within 4Å: Chain D: S.27, Y.28, F.56, F.59 Chain U: S.27, Y.28, F.59 Ligands: 01.32 8 PLIP interactions: 4 interactions with chain D, 4 interactions with chain U Hydrophobic interactions: D:Y.28, D:F.56, U:F.59, U:F.59, U:F.59 pi-Stacking: D:F.59, D:F.59, U:F.59 01.176: 8 residues within 4Å: Chain A: S.27, Y.28, F.56, F.59 Chain V: S.27, Y.28, F.59 Ligands: 01.8 8 PLIP interactions: 4 interactions with chain V, 4 interactions with chain A Hydrophobic interactions: V:F.59, V:F.59, V:F.59, A:Y.28, A:F.56 pi-Stacking: V:F.59, A:F.59, A:F.59 01.184: 8 residues within 4Å: Chain B: S.27, Y.28, F.56, F.59 Chain W: S.27, Y.28, F.59 Ligands: 01.16 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain W Hydrophobic interactions: B:Y.28, B:F.56, W:F.59, W:F.59, W:F.59 pi-Stacking: B:F.59, B:F.59, W:F.59 01.192: 8 residues within 4Å: Chain C: S.27, Y.28, F.56, F.59 Chain X: S.27, Y.28, F.59 Ligands: 01.24 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain X Hydrophobic interactions: C:Y.28, C:F.56, X:F.59, X:F.59, X:F.59 pi-Stacking: C:F.59, C:F.59, X:F.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hishikawa, Y. et al., Design of Aromatic Interaction Networks in a Protein Cage Modulated by Fluorescent Ligand Binding. Adv Sci (2025)

Release Date

2025-03-05

Peptides

Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Ferritin light chain

Related Entries With Identical Sequence