SMTL ID : 9kn8.1

Crystal structure of Horse spleen L-ferritin mutant (E53F/E56F/E57F/R59F/E60F/E63F) with Coumarin 153

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-24-mer

Ligands

120 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: D.38, C.48 Ligand excluded by PLIP CD.2: 2 residues within 4Å: Chain A: D.80 Ligands: CL.11 Ligand excluded by PLIP CD.3: 6 residues within 4Å: Chain A: D.127, S.131 Chain E: D.127 Chain I: D.127 Ligands: CD.47, CD.91 Ligand excluded by PLIP CD.4: 8 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.5, CD.48, CD.49, CD.92, CD.93 Ligand excluded by PLIP CD.5: 8 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.4, CD.48, CD.49, CD.92, CD.93 Ligand excluded by PLIP CD.12: 2 residues within 4Å: Chain B: D.38, C.48 Ligand excluded by PLIP CD.13: 2 residues within 4Å: Chain B: D.80 Ligands: CL.22 Ligand excluded by PLIP CD.14: 6 residues within 4Å: Chain B: D.127, S.131 Chain G: D.127 Chain L: D.127 Ligands: CD.69, CD.124 Ligand excluded by PLIP CD.15: 8 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.16, CD.70, CD.71, CD.125, CD.126 Ligand excluded by PLIP CD.16: 8 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.15, CD.70, CD.71, CD.125, CD.126 Ligand excluded by PLIP CD.23: 2 residues within 4Å: Chain C: D.38, C.48 Ligand excluded by PLIP CD.24: 2 residues within 4Å: Chain C: D.80 Ligands: CL.33 Ligand excluded by PLIP CD.25: 6 residues within 4Å: Chain C: D.127, S.131 Chain H: D.127 Chain J: D.127 Ligands: CD.80, CD.102 Ligand excluded by PLIP CD.26: 8 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.27, CD.81, CD.82, CD.103, CD.104 Ligand excluded by PLIP CD.27: 8 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.26, CD.81, CD.82, CD.103, CD.104 Ligand excluded by PLIP CD.34: 2 residues within 4Å: Chain D: D.38, C.48 Ligand excluded by PLIP CD.35: 2 residues within 4Å: Chain D: D.80 Ligands: CL.44 Ligand excluded by PLIP CD.36: 6 residues within 4Å: Chain D: D.127, S.131 Chain F: D.127 Chain K: D.127 Ligands: CD.58, CD.113 Ligand excluded by PLIP CD.37: 8 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.38, CD.59, CD.60, CD.114, CD.115 Ligand excluded by PLIP CD.38: 8 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.37, CD.59, CD.60, CD.114, CD.115 Ligand excluded by PLIP CD.45: 2 residues within 4Å: Chain E: D.38, C.48 Ligand excluded by PLIP CD.46: 2 residues within 4Å: Chain E: D.80 Ligands: CL.55 Ligand excluded by PLIP CD.47: 6 residues within 4Å: Chain A: D.127 Chain E: D.127, S.131 Chain I: D.127 Ligands: CD.3, CD.91 Ligand excluded by PLIP CD.48: 8 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.4, CD.5, CD.49, CD.92, CD.93 Ligand excluded by PLIP CD.49: 8 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.4, CD.5, CD.48, CD.92, CD.93 Ligand excluded by PLIP CD.56: 2 residues within 4Å: Chain F: D.38, C.48 Ligand excluded by PLIP CD.57: 2 residues within 4Å: Chain F: D.80 Ligands: CL.66 Ligand excluded by PLIP CD.58: 6 residues within 4Å: Chain D: D.127 Chain F: D.127, S.131 Chain K: D.127 Ligands: CD.36, CD.113 Ligand excluded by PLIP CD.59: 8 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.37, CD.38, CD.60, CD.114, CD.115 Ligand excluded by PLIP CD.60: 8 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.37, CD.38, CD.59, CD.114, CD.115 Ligand excluded by PLIP CD.67: 2 residues within 4Å: Chain G: D.38, C.48 Ligand excluded by PLIP CD.68: 2 residues within 4Å: Chain G: D.80 Ligands: CL.77 Ligand excluded by PLIP CD.69: 6 residues within 4Å: Chain B: D.127 Chain G: D.127, S.131 Chain L: D.127 Ligands: CD.14, CD.124 Ligand excluded by PLIP CD.70: 8 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.15, CD.16, CD.71, CD.125, CD.126 Ligand excluded by PLIP CD.71: 8 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.15, CD.16, CD.70, CD.125, CD.126 Ligand excluded by PLIP CD.78: 2 residues within 4Å: Chain H: D.38, C.48 Ligand excluded by PLIP CD.79: 2 residues within 4Å: Chain H: D.80 Ligands: CL.88 Ligand excluded by PLIP CD.80: 6 residues within 4Å: Chain C: D.127 Chain H: D.127, S.131 Chain J: D.127 Ligands: CD.25, CD.102 Ligand excluded by PLIP CD.81: 8 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.26, CD.27, CD.82, CD.103, CD.104 Ligand excluded by PLIP CD.82: 8 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.26, CD.27, CD.81, CD.103, CD.104 Ligand excluded by PLIP CD.89: 2 residues within 4Å: Chain I: D.38, C.48 Ligand excluded by PLIP CD.90: 2 residues within 4Å: Chain I: D.80 Ligands: CL.99 Ligand excluded by PLIP CD.91: 6 residues within 4Å: Chain A: D.127 Chain E: D.127 Chain I: D.127, S.131 Ligands: CD.3, CD.47 Ligand excluded by PLIP CD.92: 8 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.4, CD.5, CD.48, CD.49, CD.93 Ligand excluded by PLIP CD.93: 8 residues within 4Å: Chain A: E.130 Chain E: E.130 Chain I: E.130 Ligands: CD.4, CD.5, CD.48, CD.49, CD.92 Ligand excluded by PLIP CD.100: 2 residues within 4Å: Chain J: D.38, C.48 Ligand excluded by PLIP CD.101: 2 residues within 4Å: Chain J: D.80 Ligands: CL.110 Ligand excluded by PLIP CD.102: 6 residues within 4Å: Chain C: D.127 Chain H: D.127 Chain J: D.127, S.131 Ligands: CD.25, CD.80 Ligand excluded by PLIP CD.103: 8 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.26, CD.27, CD.81, CD.82, CD.104 Ligand excluded by PLIP CD.104: 8 residues within 4Å: Chain C: E.130 Chain H: E.130 Chain J: E.130 Ligands: CD.26, CD.27, CD.81, CD.82, CD.103 Ligand excluded by PLIP CD.111: 2 residues within 4Å: Chain K: D.38, C.48 Ligand excluded by PLIP CD.112: 2 residues within 4Å: Chain K: D.80 Ligands: CL.121 Ligand excluded by PLIP CD.113: 6 residues within 4Å: Chain D: D.127 Chain F: D.127 Chain K: D.127, S.131 Ligands: CD.36, CD.58 Ligand excluded by PLIP CD.114: 8 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.37, CD.38, CD.59, CD.60, CD.115 Ligand excluded by PLIP CD.115: 8 residues within 4Å: Chain D: E.130 Chain F: E.130 Chain K: E.130 Ligands: CD.37, CD.38, CD.59, CD.60, CD.114 Ligand excluded by PLIP CD.122: 2 residues within 4Å: Chain L: D.38, C.48 Ligand excluded by PLIP CD.123: 2 residues within 4Å: Chain L: D.80 Ligands: CL.132 Ligand excluded by PLIP CD.124: 6 residues within 4Å: Chain B: D.127 Chain G: D.127 Chain L: D.127, S.131 Ligands: CD.14, CD.69 Ligand excluded by PLIP CD.125: 8 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.15, CD.16, CD.70, CD.71, CD.126 Ligand excluded by PLIP CD.126: 8 residues within 4Å: Chain B: E.130 Chain G: E.130 Chain L: E.130 Ligands: CD.15, CD.16, CD.70, CD.71, CD.125 Ligand excluded by PLIP CD.133: 2 residues within 4Å: Chain M: D.38, C.48 Ligand excluded by PLIP CD.134: 2 residues within 4Å: Chain M: D.80 Ligands: CL.143 Ligand excluded by PLIP CD.135: 6 residues within 4Å: Chain M: D.127, S.131 Chain Q: D.127 Chain U: D.127 Ligands: CD.179, CD.223 Ligand excluded by PLIP CD.136: 8 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.137, CD.180, CD.181, CD.224, CD.225 Ligand excluded by PLIP CD.137: 8 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.136, CD.180, CD.181, CD.224, CD.225 Ligand excluded by PLIP CD.144: 2 residues within 4Å: Chain N: D.38, C.48 Ligand excluded by PLIP CD.145: 2 residues within 4Å: Chain N: D.80 Ligands: CL.154 Ligand excluded by PLIP CD.146: 6 residues within 4Å: Chain N: D.127, S.131 Chain S: D.127 Chain X: D.127 Ligands: CD.201, CD.256 Ligand excluded by PLIP CD.147: 8 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.148, CD.202, CD.203, CD.257, CD.258 Ligand excluded by PLIP CD.148: 8 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.147, CD.202, CD.203, CD.257, CD.258 Ligand excluded by PLIP CD.155: 2 residues within 4Å: Chain O: D.38, C.48 Ligand excluded by PLIP CD.156: 2 residues within 4Å: Chain O: D.80 Ligands: CL.165 Ligand excluded by PLIP CD.157: 6 residues within 4Å: Chain O: D.127, S.131 Chain T: D.127 Chain V: D.127 Ligands: CD.212, CD.234 Ligand excluded by PLIP CD.158: 8 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.159, CD.213, CD.214, CD.235, CD.236 Ligand excluded by PLIP CD.159: 8 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.158, CD.213, CD.214, CD.235, CD.236 Ligand excluded by PLIP CD.166: 2 residues within 4Å: Chain P: D.38, C.48 Ligand excluded by PLIP CD.167: 2 residues within 4Å: Chain P: D.80 Ligands: CL.176 Ligand excluded by PLIP CD.168: 6 residues within 4Å: Chain P: D.127, S.131 Chain R: D.127 Chain W: D.127 Ligands: CD.190, CD.245 Ligand excluded by PLIP CD.169: 8 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.170, CD.191, CD.192, CD.246, CD.247 Ligand excluded by PLIP CD.170: 8 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.169, CD.191, CD.192, CD.246, CD.247 Ligand excluded by PLIP CD.177: 2 residues within 4Å: Chain Q: D.38, C.48 Ligand excluded by PLIP CD.178: 2 residues within 4Å: Chain Q: D.80 Ligands: CL.187 Ligand excluded by PLIP CD.179: 6 residues within 4Å: Chain M: D.127 Chain Q: D.127, S.131 Chain U: D.127 Ligands: CD.135, CD.223 Ligand excluded by PLIP CD.180: 8 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.136, CD.137, CD.181, CD.224, CD.225 Ligand excluded by PLIP CD.181: 8 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.136, CD.137, CD.180, CD.224, CD.225 Ligand excluded by PLIP CD.188: 2 residues within 4Å: Chain R: D.38, C.48 Ligand excluded by PLIP CD.189: 2 residues within 4Å: Chain R: D.80 Ligands: CL.198 Ligand excluded by PLIP CD.190: 6 residues within 4Å: Chain P: D.127 Chain R: D.127, S.131 Chain W: D.127 Ligands: CD.168, CD.245 Ligand excluded by PLIP CD.191: 8 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.169, CD.170, CD.192, CD.246, CD.247 Ligand excluded by PLIP CD.192: 8 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.169, CD.170, CD.191, CD.246, CD.247 Ligand excluded by PLIP CD.199: 2 residues within 4Å: Chain S: D.38, C.48 Ligand excluded by PLIP CD.200: 2 residues within 4Å: Chain S: D.80 Ligands: CL.209 Ligand excluded by PLIP CD.201: 6 residues within 4Å: Chain N: D.127 Chain S: D.127, S.131 Chain X: D.127 Ligands: CD.146, CD.256 Ligand excluded by PLIP CD.202: 8 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.147, CD.148, CD.203, CD.257, CD.258 Ligand excluded by PLIP CD.203: 8 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.147, CD.148, CD.202, CD.257, CD.258 Ligand excluded by PLIP CD.210: 2 residues within 4Å: Chain T: D.38, C.48 Ligand excluded by PLIP CD.211: 2 residues within 4Å: Chain T: D.80 Ligands: CL.220 Ligand excluded by PLIP CD.212: 6 residues within 4Å: Chain O: D.127 Chain T: D.127, S.131 Chain V: D.127 Ligands: CD.157, CD.234 Ligand excluded by PLIP CD.213: 8 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.158, CD.159, CD.214, CD.235, CD.236 Ligand excluded by PLIP CD.214: 8 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.158, CD.159, CD.213, CD.235, CD.236 Ligand excluded by PLIP CD.221: 2 residues within 4Å: Chain U: D.38, C.48 Ligand excluded by PLIP CD.222: 2 residues within 4Å: Chain U: D.80 Ligands: CL.231 Ligand excluded by PLIP CD.223: 6 residues within 4Å: Chain M: D.127 Chain Q: D.127 Chain U: D.127, S.131 Ligands: CD.135, CD.179 Ligand excluded by PLIP CD.224: 8 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.136, CD.137, CD.180, CD.181, CD.225 Ligand excluded by PLIP CD.225: 8 residues within 4Å: Chain M: E.130 Chain Q: E.130 Chain U: E.130 Ligands: CD.136, CD.137, CD.180, CD.181, CD.224 Ligand excluded by PLIP CD.232: 2 residues within 4Å: Chain V: D.38, C.48 Ligand excluded by PLIP CD.233: 2 residues within 4Å: Chain V: D.80 Ligands: CL.242 Ligand excluded by PLIP CD.234: 6 residues within 4Å: Chain O: D.127 Chain T: D.127 Chain V: D.127, S.131 Ligands: CD.157, CD.212 Ligand excluded by PLIP CD.235: 8 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.158, CD.159, CD.213, CD.214, CD.236 Ligand excluded by PLIP CD.236: 8 residues within 4Å: Chain O: E.130 Chain T: E.130 Chain V: E.130 Ligands: CD.158, CD.159, CD.213, CD.214, CD.235 Ligand excluded by PLIP CD.243: 2 residues within 4Å: Chain W: D.38, C.48 Ligand excluded by PLIP CD.244: 2 residues within 4Å: Chain W: D.80 Ligands: CL.253 Ligand excluded by PLIP CD.245: 6 residues within 4Å: Chain P: D.127 Chain R: D.127 Chain W: D.127, S.131 Ligands: CD.168, CD.190 Ligand excluded by PLIP CD.246: 8 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.169, CD.170, CD.191, CD.192, CD.247 Ligand excluded by PLIP CD.247: 8 residues within 4Å: Chain P: E.130 Chain R: E.130 Chain W: E.130 Ligands: CD.169, CD.170, CD.191, CD.192, CD.246 Ligand excluded by PLIP CD.254: 2 residues within 4Å: Chain X: D.38, C.48 Ligand excluded by PLIP CD.255: 2 residues within 4Å: Chain X: D.80 Ligands: CL.264 Ligand excluded by PLIP CD.256: 6 residues within 4Å: Chain N: D.127 Chain S: D.127 Chain X: D.127, S.131 Ligands: CD.146, CD.201 Ligand excluded by PLIP CD.257: 8 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.147, CD.148, CD.202, CD.203, CD.258 Ligand excluded by PLIP CD.258: 8 residues within 4Å: Chain N: E.130 Chain S: E.130 Chain X: E.130 Ligands: CD.147, CD.148, CD.202, CD.203, CD.257 Ligand excluded by PLIP

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 2 residues within 4Å: Chain A: Q.6, N.7 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain B: Q.6, N.7 Ligand excluded by PLIP SO4.28: 2 residues within 4Å: Chain C: Q.6, N.7 Ligand excluded by PLIP SO4.39: 2 residues within 4Å: Chain D: Q.6, N.7 Ligand excluded by PLIP SO4.50: 2 residues within 4Å: Chain E: Q.6, N.7 Ligand excluded by PLIP SO4.61: 2 residues within 4Å: Chain F: Q.6, N.7 Ligand excluded by PLIP SO4.72: 2 residues within 4Å: Chain G: Q.6, N.7 Ligand excluded by PLIP SO4.83: 2 residues within 4Å: Chain H: Q.6, N.7 Ligand excluded by PLIP SO4.94: 2 residues within 4Å: Chain I: Q.6, N.7 Ligand excluded by PLIP SO4.105: 2 residues within 4Å: Chain J: Q.6, N.7 Ligand excluded by PLIP SO4.116: 2 residues within 4Å: Chain K: Q.6, N.7 Ligand excluded by PLIP SO4.127: 2 residues within 4Å: Chain L: Q.6, N.7 Ligand excluded by PLIP SO4.138: 2 residues within 4Å: Chain M: Q.6, N.7 Ligand excluded by PLIP SO4.149: 2 residues within 4Å: Chain N: Q.6, N.7 Ligand excluded by PLIP SO4.160: 2 residues within 4Å: Chain O: Q.6, N.7 Ligand excluded by PLIP SO4.171: 2 residues within 4Å: Chain P: Q.6, N.7 Ligand excluded by PLIP SO4.182: 2 residues within 4Å: Chain Q: Q.6, N.7 Ligand excluded by PLIP SO4.193: 2 residues within 4Å: Chain R: Q.6, N.7 Ligand excluded by PLIP SO4.204: 2 residues within 4Å: Chain S: Q.6, N.7 Ligand excluded by PLIP SO4.215: 2 residues within 4Å: Chain T: Q.6, N.7 Ligand excluded by PLIP SO4.226: 2 residues within 4Å: Chain U: Q.6, N.7 Ligand excluded by PLIP SO4.237: 2 residues within 4Å: Chain V: Q.6, N.7 Ligand excluded by PLIP SO4.248: 2 residues within 4Å: Chain W: Q.6, N.7 Ligand excluded by PLIP SO4.259: 2 residues within 4Å: Chain X: Q.6, N.7 Ligand excluded by PLIP

24 x 01: Coumarin 153

01.7: 12 residues within 4Å: Chain A: L.24, S.27, Y.28, F.56, F.59, L.81 Chain V: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.238 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain V Hydrophobic interactions: A:Y.28, A:F.59, V:Y.28, V:F.56, V:F.59, V:F.59, V:F.59 pi-Stacking: A:F.59 01.18: 12 residues within 4Å: Chain B: L.24, S.27, Y.28, F.56, F.59, L.81 Chain W: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.249 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain W Hydrophobic interactions: B:Y.28, B:F.59, W:Y.28, W:F.56, W:F.59, W:F.59, W:F.59 pi-Stacking: B:F.59 01.29: 12 residues within 4Å: Chain C: L.24, S.27, Y.28, F.56, F.59, L.81 Chain X: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.260 8 PLIP interactions: 5 interactions with chain X, 3 interactions with chain C Hydrophobic interactions: X:Y.28, X:F.56, X:F.59, X:F.59, X:F.59, C:Y.28, C:F.59 pi-Stacking: C:F.59 01.40: 12 residues within 4Å: Chain D: L.24, S.27, Y.28, F.56, F.59, L.81 Chain U: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.227 8 PLIP interactions: 3 interactions with chain D, 5 interactions with chain U Hydrophobic interactions: D:Y.28, D:F.59, U:Y.28, U:F.56, U:F.59, U:F.59, U:F.59 pi-Stacking: D:F.59 01.51: 12 residues within 4Å: Chain E: L.24, S.27, Y.28, F.56, F.59, L.81 Chain Q: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.183 8 PLIP interactions: 5 interactions with chain Q, 3 interactions with chain E Hydrophobic interactions: Q:Y.28, Q:F.56, Q:F.59, Q:F.59, Q:F.59, E:Y.28, E:F.59 pi-Stacking: E:F.59 01.62: 12 residues within 4Å: Chain F: L.24, S.27, Y.28, F.56, F.59, L.81 Chain T: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.216 8 PLIP interactions: 5 interactions with chain T, 3 interactions with chain F Hydrophobic interactions: T:Y.28, T:F.56, T:F.59, T:F.59, T:F.59, F:Y.28, F:F.59 pi-Stacking: F:F.59 01.73: 12 residues within 4Å: Chain G: L.24, S.27, Y.28, F.56, F.59, L.81 Chain S: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.205 8 PLIP interactions: 5 interactions with chain S, 3 interactions with chain G Hydrophobic interactions: S:Y.28, S:F.56, S:F.59, S:F.59, S:F.59, G:Y.28, G:F.59 pi-Stacking: G:F.59 01.84: 12 residues within 4Å: Chain H: L.24, S.27, Y.28, F.56, F.59, L.81 Chain R: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.194 8 PLIP interactions: 5 interactions with chain R, 3 interactions with chain H Hydrophobic interactions: R:Y.28, R:F.56, R:F.59, R:F.59, R:F.59, H:Y.28, H:F.59 pi-Stacking: H:F.59 01.95: 12 residues within 4Å: Chain I: L.24, S.27, Y.28, F.56, F.59, L.81 Chain P: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.172 8 PLIP interactions: 5 interactions with chain P, 3 interactions with chain I Hydrophobic interactions: P:Y.28, P:F.56, P:F.59, P:F.59, P:F.59, I:Y.28, I:F.59 pi-Stacking: I:F.59 01.106: 12 residues within 4Å: Chain J: L.24, S.27, Y.28, F.56, F.59, L.81 Chain M: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.139 8 PLIP interactions: 3 interactions with chain J, 5 interactions with chain M Hydrophobic interactions: J:Y.28, J:F.59, M:Y.28, M:F.56, M:F.59, M:F.59, M:F.59 pi-Stacking: J:F.59 01.117: 12 residues within 4Å: Chain K: L.24, S.27, Y.28, F.56, F.59, L.81 Chain N: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.150 8 PLIP interactions: 5 interactions with chain N, 3 interactions with chain K Hydrophobic interactions: N:Y.28, N:F.56, N:F.59, N:F.59, N:F.59, K:Y.28, K:F.59 pi-Stacking: K:F.59 01.128: 12 residues within 4Å: Chain L: L.24, S.27, Y.28, F.56, F.59, L.81 Chain O: S.27, Y.28, A.55, F.56, F.59 Ligands: 01.161 8 PLIP interactions: 5 interactions with chain O, 3 interactions with chain L Hydrophobic interactions: O:Y.28, O:F.56, O:F.59, O:F.59, O:F.59, L:Y.28, L:F.59 pi-Stacking: L:F.59 01.139: 12 residues within 4Å: Chain J: S.27, Y.28, A.55, F.56, F.59 Chain M: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.106 8 PLIP interactions: 5 interactions with chain J, 3 interactions with chain M Hydrophobic interactions: J:Y.28, J:F.56, J:F.59, J:F.59, J:F.59, M:Y.28, M:F.59 pi-Stacking: M:F.59 01.150: 12 residues within 4Å: Chain K: S.27, Y.28, A.55, F.56, F.59 Chain N: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.117 8 PLIP interactions: 3 interactions with chain N, 5 interactions with chain K Hydrophobic interactions: N:Y.28, N:F.59, K:Y.28, K:F.56, K:F.59, K:F.59, K:F.59 pi-Stacking: N:F.59 01.161: 12 residues within 4Å: Chain L: S.27, Y.28, A.55, F.56, F.59 Chain O: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.128 8 PLIP interactions: 5 interactions with chain L, 3 interactions with chain O Hydrophobic interactions: L:Y.28, L:F.56, L:F.59, L:F.59, L:F.59, O:Y.28, O:F.59 pi-Stacking: O:F.59 01.172: 12 residues within 4Å: Chain I: S.27, Y.28, A.55, F.56, F.59 Chain P: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.95 8 PLIP interactions: 5 interactions with chain I, 3 interactions with chain P Hydrophobic interactions: I:Y.28, I:F.56, I:F.59, I:F.59, I:F.59, P:Y.28, P:F.59 pi-Stacking: P:F.59 01.183: 12 residues within 4Å: Chain E: S.27, Y.28, A.55, F.56, F.59 Chain Q: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.51 8 PLIP interactions: 3 interactions with chain Q, 5 interactions with chain E Hydrophobic interactions: Q:Y.28, Q:F.59, E:Y.28, E:F.56, E:F.59, E:F.59, E:F.59 pi-Stacking: Q:F.59 01.194: 12 residues within 4Å: Chain H: S.27, Y.28, A.55, F.56, F.59 Chain R: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.84 8 PLIP interactions: 5 interactions with chain H, 3 interactions with chain R Hydrophobic interactions: H:Y.28, H:F.56, H:F.59, H:F.59, H:F.59, R:Y.28, R:F.59 pi-Stacking: R:F.59 01.205: 12 residues within 4Å: Chain G: S.27, Y.28, A.55, F.56, F.59 Chain S: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.73 8 PLIP interactions: 5 interactions with chain G, 3 interactions with chain S Hydrophobic interactions: G:Y.28, G:F.56, G:F.59, G:F.59, G:F.59, S:Y.28, S:F.59 pi-Stacking: S:F.59 01.216: 12 residues within 4Å: Chain F: S.27, Y.28, A.55, F.56, F.59 Chain T: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.62 8 PLIP interactions: 5 interactions with chain F, 3 interactions with chain T Hydrophobic interactions: F:Y.28, F:F.56, F:F.59, F:F.59, F:F.59, T:Y.28, T:F.59 pi-Stacking: T:F.59 01.227: 12 residues within 4Å: Chain D: S.27, Y.28, A.55, F.56, F.59 Chain U: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.40 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain U Hydrophobic interactions: D:Y.28, D:F.56, D:F.59, D:F.59, D:F.59, U:Y.28, U:F.59 pi-Stacking: U:F.59 01.238: 12 residues within 4Å: Chain A: S.27, Y.28, A.55, F.56, F.59 Chain V: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.7 8 PLIP interactions: 3 interactions with chain V, 5 interactions with chain A Hydrophobic interactions: V:Y.28, V:F.59, A:Y.28, A:F.56, A:F.59, A:F.59, A:F.59 pi-Stacking: V:F.59 01.249: 12 residues within 4Å: Chain B: S.27, Y.28, A.55, F.56, F.59 Chain W: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.18 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain W Hydrophobic interactions: B:Y.28, B:F.56, B:F.59, B:F.59, B:F.59, W:Y.28, W:F.59 pi-Stacking: W:F.59 01.260: 12 residues within 4Å: Chain C: S.27, Y.28, A.55, F.56, F.59 Chain X: L.24, S.27, Y.28, F.56, F.59, L.81 Ligands: 01.29 8 PLIP interactions: 3 interactions with chain X, 5 interactions with chain C Hydrophobic interactions: X:Y.28, X:F.59, C:Y.28, C:F.56, C:F.59, C:F.59, C:F.59 pi-Stacking: X:F.59

72 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 6 residues within 4Å: Chain A: Y.36, V.42, G.90, T.91, E.163 Chain O: R.153 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain A: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain B: Y.36, V.42, G.90, T.91, E.163 Chain P: R.153 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain B: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain B: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.30: 6 residues within 4Å: Chain C: Y.36, V.42, G.90, T.91, E.163 Chain N: R.153 Ligand excluded by PLIP EDO.31: 6 residues within 4Å: Chain C: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.32: 6 residues within 4Å: Chain C: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.41: 6 residues within 4Å: Chain D: Y.36, V.42, G.90, T.91, E.163 Chain M: R.153 Ligand excluded by PLIP EDO.42: 6 residues within 4Å: Chain D: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.43: 6 residues within 4Å: Chain D: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.52: 6 residues within 4Å: Chain E: Y.36, V.42, G.90, T.91, E.163 Chain U: R.153 Ligand excluded by PLIP EDO.53: 6 residues within 4Å: Chain E: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.54: 6 residues within 4Å: Chain E: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.63: 6 residues within 4Å: Chain F: Y.36, V.42, G.90, T.91, E.163 Chain V: R.153 Ligand excluded by PLIP EDO.64: 6 residues within 4Å: Chain F: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.65: 6 residues within 4Å: Chain F: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.74: 6 residues within 4Å: Chain G: Y.36, V.42, G.90, T.91, E.163 Chain X: R.153 Ligand excluded by PLIP EDO.75: 6 residues within 4Å: Chain G: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.76: 6 residues within 4Å: Chain G: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.85: 6 residues within 4Å: Chain H: Y.36, V.42, G.90, T.91, E.163 Chain W: R.153 Ligand excluded by PLIP EDO.86: 6 residues within 4Å: Chain H: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.87: 6 residues within 4Å: Chain H: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.96: 6 residues within 4Å: Chain I: Y.36, V.42, G.90, T.91, E.163 Chain R: R.153 Ligand excluded by PLIP EDO.97: 6 residues within 4Å: Chain I: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.98: 6 residues within 4Å: Chain I: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.107: 6 residues within 4Å: Chain J: Y.36, V.42, G.90, T.91, E.163 Chain Q: R.153 Ligand excluded by PLIP EDO.108: 6 residues within 4Å: Chain J: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.109: 6 residues within 4Å: Chain J: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.118: 6 residues within 4Å: Chain K: Y.36, V.42, G.90, T.91, E.163 Chain S: R.153 Ligand excluded by PLIP EDO.119: 6 residues within 4Å: Chain K: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.120: 6 residues within 4Å: Chain K: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.129: 6 residues within 4Å: Chain L: Y.36, V.42, G.90, T.91, E.163 Chain T: R.153 Ligand excluded by PLIP EDO.130: 6 residues within 4Å: Chain L: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.131: 6 residues within 4Å: Chain L: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.140: 6 residues within 4Å: Chain C: R.153 Chain M: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.141: 6 residues within 4Å: Chain M: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.142: 6 residues within 4Å: Chain M: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.151: 6 residues within 4Å: Chain D: R.153 Chain N: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.152: 6 residues within 4Å: Chain N: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.153: 6 residues within 4Å: Chain N: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.162: 6 residues within 4Å: Chain B: R.153 Chain O: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.163: 6 residues within 4Å: Chain O: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.164: 6 residues within 4Å: Chain O: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.173: 6 residues within 4Å: Chain A: R.153 Chain P: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.174: 6 residues within 4Å: Chain P: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.175: 6 residues within 4Å: Chain P: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.184: 6 residues within 4Å: Chain I: R.153 Chain Q: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.185: 6 residues within 4Å: Chain Q: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.186: 6 residues within 4Å: Chain Q: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.195: 6 residues within 4Å: Chain J: R.153 Chain R: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.196: 6 residues within 4Å: Chain R: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.197: 6 residues within 4Å: Chain R: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.206: 6 residues within 4Å: Chain L: R.153 Chain S: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.207: 6 residues within 4Å: Chain S: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.208: 6 residues within 4Å: Chain S: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.217: 6 residues within 4Å: Chain K: R.153 Chain T: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.218: 6 residues within 4Å: Chain T: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.219: 6 residues within 4Å: Chain T: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.228: 6 residues within 4Å: Chain F: R.153 Chain U: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.229: 6 residues within 4Å: Chain U: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.230: 6 residues within 4Å: Chain U: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.239: 6 residues within 4Å: Chain E: R.153 Chain V: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.240: 6 residues within 4Å: Chain V: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.241: 6 residues within 4Å: Chain V: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.250: 6 residues within 4Å: Chain G: R.153 Chain W: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.251: 6 residues within 4Å: Chain W: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.252: 6 residues within 4Å: Chain W: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP EDO.261: 6 residues within 4Å: Chain H: R.153 Chain X: Y.36, V.42, G.90, T.91, E.163 Ligand excluded by PLIP EDO.262: 6 residues within 4Å: Chain X: Y.23, F.57, K.58, F.133, E.136, E.137 Ligand excluded by PLIP EDO.263: 6 residues within 4Å: Chain X: F.57, F.60, G.61, R.64, H.132, F.133 Ligand excluded by PLIP

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 3 residues within 4Å: Chain A: D.80 Chain V: K.83 Ligands: CD.2 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain B: D.80 Chain W: K.83 Ligands: CD.13 Ligand excluded by PLIP CL.33: 3 residues within 4Å: Chain C: D.80 Chain X: K.83 Ligands: CD.24 Ligand excluded by PLIP CL.44: 3 residues within 4Å: Chain D: D.80 Chain U: K.83 Ligands: CD.35 Ligand excluded by PLIP CL.55: 3 residues within 4Å: Chain E: D.80 Chain Q: K.83 Ligands: CD.46 Ligand excluded by PLIP CL.66: 3 residues within 4Å: Chain F: D.80 Chain T: K.83 Ligands: CD.57 Ligand excluded by PLIP CL.77: 3 residues within 4Å: Chain G: D.80 Chain S: K.83 Ligands: CD.68 Ligand excluded by PLIP CL.88: 3 residues within 4Å: Chain H: D.80 Chain R: K.83 Ligands: CD.79 Ligand excluded by PLIP CL.99: 3 residues within 4Å: Chain I: D.80 Chain P: K.83 Ligands: CD.90 Ligand excluded by PLIP CL.110: 3 residues within 4Å: Chain J: D.80 Chain M: K.83 Ligands: CD.101 Ligand excluded by PLIP CL.121: 3 residues within 4Å: Chain K: D.80 Chain N: K.83 Ligands: CD.112 Ligand excluded by PLIP CL.132: 3 residues within 4Å: Chain L: D.80 Chain O: K.83 Ligands: CD.123 Ligand excluded by PLIP CL.143: 3 residues within 4Å: Chain J: K.83 Chain M: D.80 Ligands: CD.134 Ligand excluded by PLIP CL.154: 3 residues within 4Å: Chain K: K.83 Chain N: D.80 Ligands: CD.145 Ligand excluded by PLIP CL.165: 3 residues within 4Å: Chain L: K.83 Chain O: D.80 Ligands: CD.156 Ligand excluded by PLIP CL.176: 3 residues within 4Å: Chain I: K.83 Chain P: D.80 Ligands: CD.167 Ligand excluded by PLIP CL.187: 3 residues within 4Å: Chain E: K.83 Chain Q: D.80 Ligands: CD.178 Ligand excluded by PLIP CL.198: 3 residues within 4Å: Chain H: K.83 Chain R: D.80 Ligands: CD.189 Ligand excluded by PLIP CL.209: 3 residues within 4Å: Chain G: K.83 Chain S: D.80 Ligands: CD.200 Ligand excluded by PLIP CL.220: 3 residues within 4Å: Chain F: K.83 Chain T: D.80 Ligands: CD.211 Ligand excluded by PLIP CL.231: 3 residues within 4Å: Chain D: K.83 Chain U: D.80 Ligands: CD.222 Ligand excluded by PLIP CL.242: 3 residues within 4Å: Chain A: K.83 Chain V: D.80 Ligands: CD.233 Ligand excluded by PLIP CL.253: 3 residues within 4Å: Chain B: K.83 Chain W: D.80 Ligands: CD.244 Ligand excluded by PLIP CL.264: 3 residues within 4Å: Chain C: K.83 Chain X: D.80 Ligands: CD.255 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hishikawa, Y. et al., Design of Aromatic Interaction Networks in a Protein Cage Modulated by Fluorescent Ligand Binding. Adv Sci (2025)

Release Date

2025-03-05

Peptides

Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Ferritin light chain

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