SMTL ID : 9knj.1

Crystal structure of glycerol-bound full-length PHA synthase (PhaC) from Aeromonas caviae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-trimer

Ligands

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: I.249, C.321, I.322, F.392, Y.443, I.479 No protein-ligand interaction detected (PLIP) GOL.2: 6 residues within 4Å: Chain A: F.364, L.373, L.388, S.391, H.435, L.439 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.391, A:S.391, A:H.435 GOL.3: 5 residues within 4Å: Chain A: L.181, A.185, L.373, Q.376, Q.387 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.387 GOL.4: 4 residues within 4Å: Chain A: Q.63, T.146, Y.149, Y.405 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.63 GOL.5: 8 residues within 4Å: Chain A: N.250, L.388, F.392, S.393, L.394, N.424, S.427, T.428 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.250, A:F.392, A:L.394, A:N.424, A:S.427, A:T.428, A:T.428 GOL.6: 6 residues within 4Å: Chain B: I.249, C.321, L.361, F.392, Y.443, I.479 No protein-ligand interaction detected (PLIP) GOL.7: 6 residues within 4Å: Chain B: F.364, L.373, M.383, L.388, S.391, H.435 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.391, B:S.391, B:H.435 GOL.8: 7 residues within 4Å: Chain B: L.181, A.182, A.185, E.186, L.373, Q.376, Q.387 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.186, B:Q.387 GOL.9: 5 residues within 4Å: Chain B: L.11, L.15, Y.18, W.402 Chain C: Y.110 No protein-ligand interaction detected (PLIP) GOL.10: 6 residues within 4Å: Chain B: Y.117 Chain C: T.146, Y.149, Y.401, Y.405 Ligands: GOL.11 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:Y.117, C:Y.405 GOL.11: 6 residues within 4Å: Chain B: L.124 Chain C: Q.63, L.131, L.142, T.146 Ligands: GOL.10 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chek, M.F. et al., Structures of Polyhydroxyalkanoate Synthase PhaC from Aeromonas caviae, Producing Biodegradable Plastics. Angew.Chem.Int.Ed.Engl. (2025)

Release Date

2025-05-21

Peptides

PHA synthase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

PHA synthase

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