- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-24-mer
- Ligands
- 216 x CD: CADMIUM ION(Non-covalent)
- 24 x CL: CHLORIDE ION(Non-functional Binders)
CL.10: 3 residues within 4Å:- Chain A: D.80
- Chain V: Q.82
- Ligands: CD.2
Ligand excluded by PLIPCL.27: 3 residues within 4Å:- Chain B: D.80
- Chain W: Q.82
- Ligands: CD.19
Ligand excluded by PLIPCL.44: 3 residues within 4Å:- Chain C: D.80
- Chain X: Q.82
- Ligands: CD.36
Ligand excluded by PLIPCL.61: 3 residues within 4Å:- Chain D: D.80
- Chain U: Q.82
- Ligands: CD.53
Ligand excluded by PLIPCL.78: 3 residues within 4Å:- Chain E: D.80
- Chain Q: Q.82
- Ligands: CD.70
Ligand excluded by PLIPCL.95: 3 residues within 4Å:- Chain F: D.80
- Chain T: Q.82
- Ligands: CD.87
Ligand excluded by PLIPCL.112: 3 residues within 4Å:- Chain G: D.80
- Chain S: Q.82
- Ligands: CD.104
Ligand excluded by PLIPCL.129: 3 residues within 4Å:- Chain H: D.80
- Chain R: Q.82
- Ligands: CD.121
Ligand excluded by PLIPCL.146: 3 residues within 4Å:- Chain I: D.80
- Chain P: Q.82
- Ligands: CD.138
Ligand excluded by PLIPCL.163: 3 residues within 4Å:- Chain J: D.80
- Chain M: Q.82
- Ligands: CD.155
Ligand excluded by PLIPCL.180: 3 residues within 4Å:- Chain K: D.80
- Chain N: Q.82
- Ligands: CD.172
Ligand excluded by PLIPCL.197: 3 residues within 4Å:- Chain L: D.80
- Chain O: Q.82
- Ligands: CD.189
Ligand excluded by PLIPCL.214: 3 residues within 4Å:- Chain J: Q.82
- Chain M: D.80
- Ligands: CD.206
Ligand excluded by PLIPCL.231: 3 residues within 4Å:- Chain K: Q.82
- Chain N: D.80
- Ligands: CD.223
Ligand excluded by PLIPCL.248: 3 residues within 4Å:- Chain L: Q.82
- Chain O: D.80
- Ligands: CD.240
Ligand excluded by PLIPCL.265: 3 residues within 4Å:- Chain I: Q.82
- Chain P: D.80
- Ligands: CD.257
Ligand excluded by PLIPCL.282: 3 residues within 4Å:- Chain E: Q.82
- Chain Q: D.80
- Ligands: CD.274
Ligand excluded by PLIPCL.299: 3 residues within 4Å:- Chain H: Q.82
- Chain R: D.80
- Ligands: CD.291
Ligand excluded by PLIPCL.316: 3 residues within 4Å:- Chain G: Q.82
- Chain S: D.80
- Ligands: CD.308
Ligand excluded by PLIPCL.333: 3 residues within 4Å:- Chain F: Q.82
- Chain T: D.80
- Ligands: CD.325
Ligand excluded by PLIPCL.350: 3 residues within 4Å:- Chain D: Q.82
- Chain U: D.80
- Ligands: CD.342
Ligand excluded by PLIPCL.367: 3 residues within 4Å:- Chain A: Q.82
- Chain V: D.80
- Ligands: CD.359
Ligand excluded by PLIPCL.384: 3 residues within 4Å:- Chain B: Q.82
- Chain W: D.80
- Ligands: CD.376
Ligand excluded by PLIPCL.401: 3 residues within 4Å:- Chain C: Q.82
- Chain X: D.80
- Ligands: CD.393
Ligand excluded by PLIP- 48 x SO4: SULFATE ION(Non-functional Binders)
SO4.11: 2 residues within 4Å:- Chain A: Q.6, N.7
Ligand excluded by PLIPSO4.12: 3 residues within 4Å:- Chain A: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.28: 2 residues within 4Å:- Chain B: Q.6, N.7
Ligand excluded by PLIPSO4.29: 3 residues within 4Å:- Chain B: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.45: 2 residues within 4Å:- Chain C: Q.6, N.7
Ligand excluded by PLIPSO4.46: 3 residues within 4Å:- Chain C: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.62: 2 residues within 4Å:- Chain D: Q.6, N.7
Ligand excluded by PLIPSO4.63: 3 residues within 4Å:- Chain D: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.79: 2 residues within 4Å:- Chain E: Q.6, N.7
Ligand excluded by PLIPSO4.80: 3 residues within 4Å:- Chain E: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.96: 2 residues within 4Å:- Chain F: Q.6, N.7
Ligand excluded by PLIPSO4.97: 3 residues within 4Å:- Chain F: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.113: 2 residues within 4Å:- Chain G: Q.6, N.7
Ligand excluded by PLIPSO4.114: 3 residues within 4Å:- Chain G: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.130: 2 residues within 4Å:- Chain H: Q.6, N.7
Ligand excluded by PLIPSO4.131: 3 residues within 4Å:- Chain H: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.147: 2 residues within 4Å:- Chain I: Q.6, N.7
Ligand excluded by PLIPSO4.148: 3 residues within 4Å:- Chain I: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.164: 2 residues within 4Å:- Chain J: Q.6, N.7
Ligand excluded by PLIPSO4.165: 3 residues within 4Å:- Chain J: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.181: 2 residues within 4Å:- Chain K: Q.6, N.7
Ligand excluded by PLIPSO4.182: 3 residues within 4Å:- Chain K: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.198: 2 residues within 4Å:- Chain L: Q.6, N.7
Ligand excluded by PLIPSO4.199: 3 residues within 4Å:- Chain L: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.215: 2 residues within 4Å:- Chain M: Q.6, N.7
Ligand excluded by PLIPSO4.216: 3 residues within 4Å:- Chain M: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.232: 2 residues within 4Å:- Chain N: Q.6, N.7
Ligand excluded by PLIPSO4.233: 3 residues within 4Å:- Chain N: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.249: 2 residues within 4Å:- Chain O: Q.6, N.7
Ligand excluded by PLIPSO4.250: 3 residues within 4Å:- Chain O: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.266: 2 residues within 4Å:- Chain P: Q.6, N.7
Ligand excluded by PLIPSO4.267: 3 residues within 4Å:- Chain P: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.283: 2 residues within 4Å:- Chain Q: Q.6, N.7
Ligand excluded by PLIPSO4.284: 3 residues within 4Å:- Chain Q: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.300: 2 residues within 4Å:- Chain R: Q.6, N.7
Ligand excluded by PLIPSO4.301: 3 residues within 4Å:- Chain R: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.317: 2 residues within 4Å:- Chain S: Q.6, N.7
Ligand excluded by PLIPSO4.318: 3 residues within 4Å:- Chain S: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.334: 2 residues within 4Å:- Chain T: Q.6, N.7
Ligand excluded by PLIPSO4.335: 3 residues within 4Å:- Chain T: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.351: 2 residues within 4Å:- Chain U: Q.6, N.7
Ligand excluded by PLIPSO4.352: 3 residues within 4Å:- Chain U: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.368: 2 residues within 4Å:- Chain V: Q.6, N.7
Ligand excluded by PLIPSO4.369: 3 residues within 4Å:- Chain V: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.385: 2 residues within 4Å:- Chain W: Q.6, N.7
Ligand excluded by PLIPSO4.386: 3 residues within 4Å:- Chain W: Q.86, D.87, E.88
Ligand excluded by PLIPSO4.402: 2 residues within 4Å:- Chain X: Q.6, N.7
Ligand excluded by PLIPSO4.403: 3 residues within 4Å:- Chain X: Q.86, D.87, E.88
Ligand excluded by PLIP- 96 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.13: 6 residues within 4Å:- Chain A: Y.36, V.42, G.90, T.91, E.163
- Chain O: R.153
Ligand excluded by PLIPEDO.14: 3 residues within 4Å:- Chain A: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.15: 7 residues within 4Å:- Chain A: D.38, C.48, H.49, R.52
- Chain V: K.67
- Ligands: CD.1, CD.8
Ligand excluded by PLIPEDO.16: 5 residues within 4Å:- Chain A: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.30: 6 residues within 4Å:- Chain B: Y.36, V.42, G.90, T.91, E.163
- Chain P: R.153
Ligand excluded by PLIPEDO.31: 3 residues within 4Å:- Chain B: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.32: 7 residues within 4Å:- Chain B: D.38, C.48, H.49, R.52
- Chain W: K.67
- Ligands: CD.18, CD.25
Ligand excluded by PLIPEDO.33: 5 residues within 4Å:- Chain B: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.47: 6 residues within 4Å:- Chain C: Y.36, V.42, G.90, T.91, E.163
- Chain N: R.153
Ligand excluded by PLIPEDO.48: 3 residues within 4Å:- Chain C: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.49: 7 residues within 4Å:- Chain C: D.38, C.48, H.49, R.52
- Chain X: K.67
- Ligands: CD.35, CD.42
Ligand excluded by PLIPEDO.50: 5 residues within 4Å:- Chain C: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.64: 6 residues within 4Å:- Chain D: Y.36, V.42, G.90, T.91, E.163
- Chain M: R.153
Ligand excluded by PLIPEDO.65: 3 residues within 4Å:- Chain D: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.66: 7 residues within 4Å:- Chain D: D.38, C.48, H.49, R.52
- Chain U: K.67
- Ligands: CD.52, CD.59
Ligand excluded by PLIPEDO.67: 5 residues within 4Å:- Chain D: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.81: 6 residues within 4Å:- Chain E: Y.36, V.42, G.90, T.91, E.163
- Chain U: R.153
Ligand excluded by PLIPEDO.82: 3 residues within 4Å:- Chain E: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.83: 7 residues within 4Å:- Chain E: D.38, C.48, H.49, R.52
- Chain Q: K.67
- Ligands: CD.69, CD.76
Ligand excluded by PLIPEDO.84: 5 residues within 4Å:- Chain E: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.98: 6 residues within 4Å:- Chain F: Y.36, V.42, G.90, T.91, E.163
- Chain V: R.153
Ligand excluded by PLIPEDO.99: 3 residues within 4Å:- Chain F: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.100: 7 residues within 4Å:- Chain F: D.38, C.48, H.49, R.52
- Chain T: K.67
- Ligands: CD.86, CD.93
Ligand excluded by PLIPEDO.101: 5 residues within 4Å:- Chain F: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.115: 6 residues within 4Å:- Chain G: Y.36, V.42, G.90, T.91, E.163
- Chain X: R.153
Ligand excluded by PLIPEDO.116: 3 residues within 4Å:- Chain G: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.117: 7 residues within 4Å:- Chain G: D.38, C.48, H.49, R.52
- Chain S: K.67
- Ligands: CD.103, CD.110
Ligand excluded by PLIPEDO.118: 5 residues within 4Å:- Chain G: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.132: 6 residues within 4Å:- Chain H: Y.36, V.42, G.90, T.91, E.163
- Chain W: R.153
Ligand excluded by PLIPEDO.133: 3 residues within 4Å:- Chain H: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.134: 7 residues within 4Å:- Chain H: D.38, C.48, H.49, R.52
- Chain R: K.67
- Ligands: CD.120, CD.127
Ligand excluded by PLIPEDO.135: 5 residues within 4Å:- Chain H: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.149: 6 residues within 4Å:- Chain I: Y.36, V.42, G.90, T.91, E.163
- Chain R: R.153
Ligand excluded by PLIPEDO.150: 3 residues within 4Å:- Chain I: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.151: 7 residues within 4Å:- Chain I: D.38, C.48, H.49, R.52
- Chain P: K.67
- Ligands: CD.137, CD.144
Ligand excluded by PLIPEDO.152: 5 residues within 4Å:- Chain I: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.166: 6 residues within 4Å:- Chain J: Y.36, V.42, G.90, T.91, E.163
- Chain Q: R.153
Ligand excluded by PLIPEDO.167: 3 residues within 4Å:- Chain J: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.168: 7 residues within 4Å:- Chain J: D.38, C.48, H.49, R.52
- Chain M: K.67
- Ligands: CD.154, CD.161
Ligand excluded by PLIPEDO.169: 5 residues within 4Å:- Chain J: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.183: 6 residues within 4Å:- Chain K: Y.36, V.42, G.90, T.91, E.163
- Chain S: R.153
Ligand excluded by PLIPEDO.184: 3 residues within 4Å:- Chain K: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.185: 7 residues within 4Å:- Chain K: D.38, C.48, H.49, R.52
- Chain N: K.67
- Ligands: CD.171, CD.178
Ligand excluded by PLIPEDO.186: 5 residues within 4Å:- Chain K: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.200: 6 residues within 4Å:- Chain L: Y.36, V.42, G.90, T.91, E.163
- Chain T: R.153
Ligand excluded by PLIPEDO.201: 3 residues within 4Å:- Chain L: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.202: 7 residues within 4Å:- Chain L: D.38, C.48, H.49, R.52
- Chain O: K.67
- Ligands: CD.188, CD.195
Ligand excluded by PLIPEDO.203: 5 residues within 4Å:- Chain L: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.217: 6 residues within 4Å:- Chain C: R.153
- Chain M: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.218: 3 residues within 4Å:- Chain M: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.219: 7 residues within 4Å:- Chain J: K.67
- Chain M: D.38, C.48, H.49, R.52
- Ligands: CD.205, CD.212
Ligand excluded by PLIPEDO.220: 5 residues within 4Å:- Chain M: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.234: 6 residues within 4Å:- Chain D: R.153
- Chain N: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.235: 3 residues within 4Å:- Chain N: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.236: 7 residues within 4Å:- Chain K: K.67
- Chain N: D.38, C.48, H.49, R.52
- Ligands: CD.222, CD.229
Ligand excluded by PLIPEDO.237: 5 residues within 4Å:- Chain N: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.251: 6 residues within 4Å:- Chain B: R.153
- Chain O: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.252: 3 residues within 4Å:- Chain O: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.253: 7 residues within 4Å:- Chain L: K.67
- Chain O: D.38, C.48, H.49, R.52
- Ligands: CD.239, CD.246
Ligand excluded by PLIPEDO.254: 5 residues within 4Å:- Chain O: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.268: 6 residues within 4Å:- Chain A: R.153
- Chain P: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.269: 3 residues within 4Å:- Chain P: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.270: 7 residues within 4Å:- Chain I: K.67
- Chain P: D.38, C.48, H.49, R.52
- Ligands: CD.256, CD.263
Ligand excluded by PLIPEDO.271: 5 residues within 4Å:- Chain P: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.285: 6 residues within 4Å:- Chain I: R.153
- Chain Q: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.286: 3 residues within 4Å:- Chain Q: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.287: 7 residues within 4Å:- Chain E: K.67
- Chain Q: D.38, C.48, H.49, R.52
- Ligands: CD.273, CD.280
Ligand excluded by PLIPEDO.288: 5 residues within 4Å:- Chain Q: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.302: 6 residues within 4Å:- Chain J: R.153
- Chain R: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.303: 3 residues within 4Å:- Chain R: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.304: 7 residues within 4Å:- Chain H: K.67
- Chain R: D.38, C.48, H.49, R.52
- Ligands: CD.290, CD.297
Ligand excluded by PLIPEDO.305: 5 residues within 4Å:- Chain R: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.319: 6 residues within 4Å:- Chain L: R.153
- Chain S: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.320: 3 residues within 4Å:- Chain S: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.321: 7 residues within 4Å:- Chain G: K.67
- Chain S: D.38, C.48, H.49, R.52
- Ligands: CD.307, CD.314
Ligand excluded by PLIPEDO.322: 5 residues within 4Å:- Chain S: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.336: 6 residues within 4Å:- Chain K: R.153
- Chain T: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.337: 3 residues within 4Å:- Chain T: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.338: 7 residues within 4Å:- Chain F: K.67
- Chain T: D.38, C.48, H.49, R.52
- Ligands: CD.324, CD.331
Ligand excluded by PLIPEDO.339: 5 residues within 4Å:- Chain T: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.353: 6 residues within 4Å:- Chain F: R.153
- Chain U: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.354: 3 residues within 4Å:- Chain U: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.355: 7 residues within 4Å:- Chain D: K.67
- Chain U: D.38, C.48, H.49, R.52
- Ligands: CD.341, CD.348
Ligand excluded by PLIPEDO.356: 5 residues within 4Å:- Chain U: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.370: 6 residues within 4Å:- Chain E: R.153
- Chain V: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.371: 3 residues within 4Å:- Chain V: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.372: 7 residues within 4Å:- Chain A: K.67
- Chain V: D.38, C.48, H.49, R.52
- Ligands: CD.358, CD.365
Ligand excluded by PLIPEDO.373: 5 residues within 4Å:- Chain V: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.387: 6 residues within 4Å:- Chain G: R.153
- Chain W: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.388: 3 residues within 4Å:- Chain W: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.389: 7 residues within 4Å:- Chain B: K.67
- Chain W: D.38, C.48, H.49, R.52
- Ligands: CD.375, CD.382
Ligand excluded by PLIPEDO.390: 5 residues within 4Å:- Chain W: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIPEDO.404: 6 residues within 4Å:- Chain H: R.153
- Chain X: Y.36, V.42, G.90, T.91, E.163
Ligand excluded by PLIPEDO.405: 3 residues within 4Å:- Chain X: R.5, Y.8, T.10
Ligand excluded by PLIPEDO.406: 7 residues within 4Å:- Chain C: K.67
- Chain X: D.38, C.48, H.49, R.52
- Ligands: CD.392, CD.399
Ligand excluded by PLIPEDO.407: 5 residues within 4Å:- Chain X: F.50, E.53, L.54, E.57, L.140
Ligand excluded by PLIP- 24 x 01: Nile Red
01.17: 11 residues within 4Å:- Chain A: S.27, Y.28, F.56, F.59, L.81
- Chain V: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.374
14 PLIP interactions:7 interactions with chain V, 7 interactions with chain A- Hydrophobic interactions: V:Y.28, V:F.56, V:F.56, A:Y.28, A:F.56, A:F.56, A:F.59, A:F.59
- Hydrogen bonds: V:S.27
- Water bridges: V:F.56
- pi-Stacking: V:F.59, V:F.59, A:F.59, A:F.59
01.34: 11 residues within 4Å:- Chain B: S.27, Y.28, F.56, F.59, L.81
- Chain W: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.391
14 PLIP interactions:7 interactions with chain B, 7 interactions with chain W- Hydrophobic interactions: B:Y.28, B:F.56, B:F.56, B:F.59, B:F.59, W:Y.28, W:F.56, W:F.56
- pi-Stacking: B:F.59, B:F.59, W:F.59, W:F.59
- Hydrogen bonds: W:S.27
- Water bridges: W:F.56
01.51: 11 residues within 4Å:- Chain C: S.27, Y.28, F.56, F.59, L.81
- Chain X: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.408
14 PLIP interactions:8 interactions with chain C, 6 interactions with chain X- Hydrophobic interactions: C:Y.28, C:F.56, C:F.56, C:F.59, C:F.59, X:Y.28, X:F.56, X:F.56
- Water bridges: C:E.63
- pi-Stacking: C:F.59, C:F.59, X:F.59, X:F.59
- Hydrogen bonds: X:S.27
01.68: 11 residues within 4Å:- Chain D: S.27, Y.28, F.56, F.59, L.81
- Chain U: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.357
14 PLIP interactions:8 interactions with chain D, 6 interactions with chain U- Hydrophobic interactions: D:Y.28, D:F.56, D:F.56, D:F.59, D:F.59, U:Y.28, U:F.56, U:F.56
- Water bridges: D:E.63
- pi-Stacking: D:F.59, D:F.59, U:F.59, U:F.59
- Hydrogen bonds: U:S.27
01.85: 11 residues within 4Å:- Chain E: S.27, Y.28, F.56, F.59, L.81
- Chain Q: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.289
14 PLIP interactions:7 interactions with chain E, 7 interactions with chain Q- Hydrophobic interactions: E:Y.28, E:F.56, E:F.56, E:F.59, E:F.59, Q:Y.28, Q:F.56, Q:F.56
- pi-Stacking: E:F.59, E:F.59, Q:F.59, Q:F.59
- Hydrogen bonds: Q:S.27
- Water bridges: Q:F.56
01.102: 11 residues within 4Å:- Chain F: S.27, Y.28, F.56, F.59, L.81
- Chain T: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.340
14 PLIP interactions:8 interactions with chain F, 6 interactions with chain T- Hydrophobic interactions: F:Y.28, F:F.56, F:F.56, F:F.59, F:F.59, T:Y.28, T:F.56, T:F.56
- Water bridges: F:E.63
- pi-Stacking: F:F.59, F:F.59, T:F.59, T:F.59
- Hydrogen bonds: T:S.27
01.119: 11 residues within 4Å:- Chain G: S.27, Y.28, F.56, F.59, L.81
- Chain S: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.323
14 PLIP interactions:7 interactions with chain G, 7 interactions with chain S- Hydrophobic interactions: G:Y.28, G:F.56, G:F.56, G:F.59, G:F.59, S:Y.28, S:F.56, S:F.56
- pi-Stacking: G:F.59, G:F.59, S:F.59, S:F.59
- Hydrogen bonds: S:S.27
- Water bridges: S:F.56
01.136: 11 residues within 4Å:- Chain H: S.27, Y.28, F.56, F.59, L.81
- Chain R: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.306
14 PLIP interactions:8 interactions with chain H, 6 interactions with chain R- Hydrophobic interactions: H:Y.28, H:F.56, H:F.56, H:F.59, H:F.59, R:Y.28, R:F.56, R:F.56
- Water bridges: H:E.63
- pi-Stacking: H:F.59, H:F.59, R:F.59, R:F.59
- Hydrogen bonds: R:S.27
01.153: 11 residues within 4Å:- Chain I: S.27, Y.28, F.56, F.59, L.81
- Chain P: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.272
14 PLIP interactions:8 interactions with chain I, 6 interactions with chain P- Hydrophobic interactions: I:Y.28, I:F.56, I:F.56, I:F.59, I:F.59, P:Y.28, P:F.56, P:F.56
- Water bridges: I:E.63
- pi-Stacking: I:F.59, I:F.59, P:F.59, P:F.59
- Hydrogen bonds: P:S.27
01.170: 11 residues within 4Å:- Chain J: S.27, Y.28, F.56, F.59, L.81
- Chain M: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.221
14 PLIP interactions:7 interactions with chain J, 7 interactions with chain M- Hydrophobic interactions: J:Y.28, J:F.56, J:F.56, J:F.59, J:F.59, M:Y.28, M:F.56, M:F.56
- pi-Stacking: J:F.59, J:F.59, M:F.59, M:F.59
- Hydrogen bonds: M:S.27
- Water bridges: M:F.56
01.187: 11 residues within 4Å:- Chain K: S.27, Y.28, F.56, F.59, L.81
- Chain N: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.238
14 PLIP interactions:7 interactions with chain K, 7 interactions with chain N- Hydrophobic interactions: K:Y.28, K:F.56, K:F.56, K:F.59, K:F.59, N:Y.28, N:F.56, N:F.56
- pi-Stacking: K:F.59, K:F.59, N:F.59, N:F.59
- Hydrogen bonds: N:S.27
- Water bridges: N:F.56
01.204: 11 residues within 4Å:- Chain L: S.27, Y.28, F.56, F.59, L.81
- Chain O: L.24, S.27, Y.28, F.56, F.59
- Ligands: 01.255
14 PLIP interactions:6 interactions with chain O, 8 interactions with chain L- Hydrophobic interactions: O:Y.28, O:F.56, O:F.56, L:Y.28, L:F.56, L:F.56, L:F.59, L:F.59
- Hydrogen bonds: O:S.27
- pi-Stacking: O:F.59, O:F.59, L:F.59, L:F.59
- Water bridges: L:E.63
01.221: 11 residues within 4Å:- Chain J: L.24, S.27, Y.28, F.56, F.59
- Chain M: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.170
14 PLIP interactions:6 interactions with chain J, 8 interactions with chain M- Hydrophobic interactions: J:Y.28, J:F.56, J:F.56, M:Y.28, M:F.56, M:F.56, M:F.59, M:F.59
- Hydrogen bonds: J:S.27
- pi-Stacking: J:F.59, J:F.59, M:F.59, M:F.59
- Water bridges: M:E.63
01.238: 11 residues within 4Å:- Chain K: L.24, S.27, Y.28, F.56, F.59
- Chain N: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.187
14 PLIP interactions:6 interactions with chain K, 8 interactions with chain N- Hydrophobic interactions: K:Y.28, K:F.56, K:F.56, N:Y.28, N:F.56, N:F.56, N:F.59, N:F.59
- Hydrogen bonds: K:S.27
- pi-Stacking: K:F.59, K:F.59, N:F.59, N:F.59
- Water bridges: N:E.63
01.255: 11 residues within 4Å:- Chain L: L.24, S.27, Y.28, F.56, F.59
- Chain O: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.204
14 PLIP interactions:7 interactions with chain L, 7 interactions with chain O- Hydrophobic interactions: L:Y.28, L:F.56, L:F.56, O:Y.28, O:F.56, O:F.56, O:F.59, O:F.59
- Hydrogen bonds: L:S.27
- Water bridges: L:F.56
- pi-Stacking: L:F.59, L:F.59, O:F.59, O:F.59
01.272: 11 residues within 4Å:- Chain I: L.24, S.27, Y.28, F.56, F.59
- Chain P: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.153
14 PLIP interactions:7 interactions with chain P, 7 interactions with chain I- Hydrophobic interactions: P:Y.28, P:F.56, P:F.56, P:F.59, P:F.59, I:Y.28, I:F.56, I:F.56
- pi-Stacking: P:F.59, P:F.59, I:F.59, I:F.59
- Hydrogen bonds: I:S.27
- Water bridges: I:F.56
01.289: 11 residues within 4Å:- Chain E: L.24, S.27, Y.28, F.56, F.59
- Chain Q: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.85
14 PLIP interactions:8 interactions with chain Q, 6 interactions with chain E- Hydrophobic interactions: Q:Y.28, Q:F.56, Q:F.56, Q:F.59, Q:F.59, E:Y.28, E:F.56, E:F.56
- Water bridges: Q:E.63
- pi-Stacking: Q:F.59, Q:F.59, E:F.59, E:F.59
- Hydrogen bonds: E:S.27
01.306: 11 residues within 4Å:- Chain H: L.24, S.27, Y.28, F.56, F.59
- Chain R: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.136
14 PLIP interactions:7 interactions with chain R, 7 interactions with chain H- Hydrophobic interactions: R:Y.28, R:F.56, R:F.56, R:F.59, R:F.59, H:Y.28, H:F.56, H:F.56
- pi-Stacking: R:F.59, R:F.59, H:F.59, H:F.59
- Hydrogen bonds: H:S.27
- Water bridges: H:F.56
01.323: 11 residues within 4Å:- Chain G: L.24, S.27, Y.28, F.56, F.59
- Chain S: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.119
14 PLIP interactions:6 interactions with chain G, 8 interactions with chain S- Hydrophobic interactions: G:Y.28, G:F.56, G:F.56, S:Y.28, S:F.56, S:F.56, S:F.59, S:F.59
- Hydrogen bonds: G:S.27
- pi-Stacking: G:F.59, G:F.59, S:F.59, S:F.59
- Water bridges: S:E.63
01.340: 11 residues within 4Å:- Chain F: L.24, S.27, Y.28, F.56, F.59
- Chain T: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.102
14 PLIP interactions:7 interactions with chain F, 7 interactions with chain T- Hydrophobic interactions: F:Y.28, F:F.56, F:F.56, T:Y.28, T:F.56, T:F.56, T:F.59, T:F.59
- Hydrogen bonds: F:S.27
- Water bridges: F:F.56
- pi-Stacking: F:F.59, F:F.59, T:F.59, T:F.59
01.357: 11 residues within 4Å:- Chain D: L.24, S.27, Y.28, F.56, F.59
- Chain U: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.68
14 PLIP interactions:7 interactions with chain U, 7 interactions with chain D- Hydrophobic interactions: U:Y.28, U:F.56, U:F.56, U:F.59, U:F.59, D:Y.28, D:F.56, D:F.56
- pi-Stacking: U:F.59, U:F.59, D:F.59, D:F.59
- Hydrogen bonds: D:S.27
- Water bridges: D:F.56
01.374: 11 residues within 4Å:- Chain A: L.24, S.27, Y.28, F.56, F.59
- Chain V: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.17
14 PLIP interactions:6 interactions with chain A, 8 interactions with chain V- Hydrophobic interactions: A:Y.28, A:F.56, A:F.56, V:Y.28, V:F.56, V:F.56, V:F.59, V:F.59
- Hydrogen bonds: A:S.27
- pi-Stacking: A:F.59, A:F.59, V:F.59, V:F.59
- Water bridges: V:E.63
01.391: 11 residues within 4Å:- Chain B: L.24, S.27, Y.28, F.56, F.59
- Chain W: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.34
14 PLIP interactions:6 interactions with chain B, 8 interactions with chain W- Hydrophobic interactions: B:Y.28, B:F.56, B:F.56, W:Y.28, W:F.56, W:F.56, W:F.59, W:F.59
- Hydrogen bonds: B:S.27
- pi-Stacking: B:F.59, B:F.59, W:F.59, W:F.59
- Water bridges: W:E.63
01.408: 11 residues within 4Å:- Chain C: L.24, S.27, Y.28, F.56, F.59
- Chain X: S.27, Y.28, F.56, F.59, L.81
- Ligands: 01.51
14 PLIP interactions:7 interactions with chain X, 7 interactions with chain C- Hydrophobic interactions: X:Y.28, X:F.56, X:F.56, X:F.59, X:F.59, C:Y.28, C:F.56, C:F.56
- pi-Stacking: X:F.59, X:F.59, C:F.59, C:F.59
- Hydrogen bonds: C:S.27
- Water bridges: C:F.56
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hishikawa, Y. et al., Design of Aromatic Interaction Networks in a Protein Cage Modulated by Fluorescent Ligand Binding. Adv Sci (2025)
- Release Date
- 2025-03-05
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-24-mer
- Ligands
- 216 x CD: CADMIUM ION(Non-covalent)
- 24 x CL: CHLORIDE ION(Non-functional Binders)
- 48 x SO4: SULFATE ION(Non-functional Binders)
- 96 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 24 x 01: Nile Red
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hishikawa, Y. et al., Design of Aromatic Interaction Networks in a Protein Cage Modulated by Fluorescent Ligand Binding. Adv Sci (2025)
- Release Date
- 2025-03-05
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A