SMTL ID : 9ks9.1

Crystal structure of MerTK kinase domain in complex with compound 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x 01: ~{N}-[4-[5-(3-aminophenyl)-6-(1-methylpyrazol-4-yl)furo[2,3-d]pyrimidin-4-yl]oxyphenyl]-1-(4-fluorophenyl)-2-oxidanylidene-pyridine-3-carboxamide

01.1: 24 residues within 4Å: Chain A: L.23, G.24, V.31, A.47, K.49, E.67, M.71, I.80, V.99, L.101, P.102, F.103, M.104, K.105, G.107, D.108, L.144, F.149, H.151, M.160, V.169, A.170, D.171, F.172 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.23, A:L.23, A:V.31, A:V.31, A:K.49, A:E.67, A:I.80, A:L.101, A:F.149, A:A.170, A:D.171, A:F.172 Hydrogen bonds: A:K.49, A:M.104, A:D.108, A:D.171 pi-Stacking: A:F.172 01.2: 22 residues within 4Å: Chain B: L.23, G.24, V.31, A.47, K.49, M.71, I.80, L.101, P.102, F.103, M.104, K.105, G.107, D.108, L.144, F.149, H.151, M.160, V.169, A.170, D.171, F.172 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.23, B:V.31, B:V.31, B:V.31, B:I.80, B:L.101, B:L.101, B:D.171, B:F.172 Hydrogen bonds: B:K.49, B:M.104, B:D.108, B:D.171 pi-Stacking: B:F.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, Y.H. et al., Structure-Based Design of Potent and Selective MerTK Inhibitors by Modulating the Conformation of alpha C Helix. J.Med.Chem. (2025)

Release Date

2025-10-08

Peptides

Tyrosine-protein kinase Mer: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine-protein kinase Mer

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