SMTL ID : 9l1n.1

Structure of Western equine encephalitis virus 71V1658 strain VLP in complex with human PCDH10 EC1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-1-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.139 No protein-ligand interaction detected (PLIP) NAG.2: 3 residues within 4Å: Chain B: G.194, N.196, T.213 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.196 NAG.3: 2 residues within 4Å: Chain D: N.139, H.327 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain E: G.194, N.196 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.196 NAG.5: 2 residues within 4Å: Chain G: N.139, H.327 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.139 NAG.6: 2 residues within 4Å: Chain H: G.194, N.196 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain J: N.139, H.327, H.345 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain K: G.194, N.196 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:N.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, B. et al., Structural basis for the recognition of two different types of receptors by Western equine encephalitis virus. Cell Rep (2025)

Release Date

2025-06-04

Peptides

E1 glycoprotein: ADGJ
E2 glycoprotein: BEHK
Capsid glycoprotein: CFIL
Protocadherin-10: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

B
B

E
E

H
H

K
K

C
C

F
F

I
I

L
L

M
M

Membrane

We predict this structure to be a membrane protein.
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E1 glycoprotein

E2 glycoprotein

Capsid glycoprotein

Protocadherin-10