SMTL ID : 9l1y.1

Vitamin K-dependent gamma-carboxylase apo status

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.46 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: T.561, E.563, Q.568, N.570, Y.590, T.592 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.592

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.550, Q.580, V.604 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.550, A:Q.580 NAG.3: 3 residues within 4Å: Chain A: N.427, P.428, G.429 No protein-ligand interaction detected (PLIP)

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.4: 7 residues within 4Å: Chain A: L.144, W.147, Y.148, Y.162, L.166, E.373, L.377 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.144, A:Y.148, A:L.166 Hydrogen bonds: A:Y.162, A:Q.374

1 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.5: 6 residues within 4Å: Chain A: F.73, L.77, F.692, R.693, F.696, Y.722 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.692, A:R.693, A:F.696

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, D. et al., Vitamin K-dependent gamma-carboxylase apo status. To Be Published

Release Date

2025-10-22

Peptides

Vitamin K-dependent gamma-carboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Vitamin K-dependent gamma-carboxylase

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