SMTL ID : 9l40.1

kinase of ATR bound VE-822 state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x 01: VE-822

01.1: 15 residues within 4Å: Chain A: S.2305, L.2306, K.2327, D.2330, Y.2365, I.2377, E.2378, W.2379, V.2380, T.2383, A.2384, G.2385, E.2479, V.2493, D.2494 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.2306, A:W.2379, A:W.2379, A:D.2494 Hydrogen bonds: A:Y.2365, A:E.2378, A:V.2380, A:D.2494 pi-Stacking: A:W.2379 01.2: 19 residues within 4Å: Chain A: Y.1941, L.1944, L.1945, L.1955, Y.1956, R.1959, V.1975, K.1978 Chain B: A.1690, S.1693, A.1694, R.1696, K.1697, A.1698, E.1699, P.1700, Q.1705, E.1708, L.1712 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.1955, A:R.1959, A:R.1959, B:A.1694 Hydrogen bonds: A:Y.1956, A:Y.1956 01.3: 17 residues within 4Å: Chain B: S.2305, L.2306, M.2325, K.2327, D.2330, Y.2365, E.2378, W.2379, V.2380, T.2383, A.2384, G.2385, E.2479, L.2482, V.2493, D.2494, N.2496 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.2306, B:W.2379, B:W.2379, B:L.2482, B:L.2482, B:V.2493, B:D.2494 Hydrogen bonds: B:D.2330, B:Y.2365, B:E.2378, B:V.2380, B:D.2494 pi-Stacking: B:W.2379 pi-Cation interactions: B:K.2327 01.4: 19 residues within 4Å: Chain A: A.1690, S.1693, A.1694, R.1696, K.1697, E.1699, P.1700, Q.1705, E.1708, L.1712 Chain B: Y.1941, L.1944, L.1945, L.1955, Y.1956, R.1959, Q.1971, V.1975, K.1978 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.1955, B:R.1959 Hydrogen bonds: B:Y.1941, B:Y.1956, B:K.1978

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, G. et al., Molecular architecture and inhibition mechanism of human ATR-ATRIP. Sci Bull (Beijing) (2025)

Release Date

2025-05-21

Peptides

Serine/threonine-protein kinase ATR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase ATR

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