SMTL ID : 9l4a.1 (1 other biounit)

Crystal structure of HLA-C*12:02-MY9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MET- ALA- ARG- GLU- LEU- HIS- PRO- GLU- TYR: MY9(Non-covalent)

MET-ALA-ARG-GLU-LEU-HIS-PRO-GLU-TYR.1: 29 residues within 4Å: Chain A: M.4, Y.6, Y.8, R.61, E.62, K.65, Y.66, R.68, Q.69, A.72, V.75, S.76, N.79, Y.83, L.94, R.96, Y.98, S.115, Y.122, T.142, K.145, W.146, E.151, Q.154, W.155, Y.158, T.162, W.166, Y.170 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:L.94, A:L.94, A:Y.98, A:Y.122, A:T.142, A:W.166 Hydrogen bonds: A:E.62, A:K.65, A:Q.69, A:S.76, A:N.79, A:Y.83, A:R.96, A:R.96, A:Y.98, A:S.115, A:S.115, A:W.146, A:W.155, A:Y.170, A:Y.170 Water bridges: A:Y.6, A:R.61, A:K.65, A:Q.69, A:Y.98, A:Y.98, A:E.151 Salt bridges: A:R.61, A:K.65, A:K.145, A:E.151 pi-Stacking: A:W.146, A:W.146, A:W.146 pi-Cation interactions: A:R.96, A:W.155, A:W.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, M. et al., Biochemical and structural insights into position 97 micropolymorphisms in human leukocyte antigen (HLA)-C*12 allotypes and their differential disease associations. Int.J.Biol.Macromol. (2025)

Release Date

2025-03-19

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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