SMTL ID : 9l6c.1

Cryo-EM structure of Delta RBD complexed with ConD-852, P2C-1F11 and S304 Fabs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.33 Å

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG.1: 4 residues within 4Å: Chain B: F.6, G.7, N.11, V.35 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, B. et al., Structure and function of an unusual R452-dependent monoclonal antibody against SARS-CoV-2. J.Virol. (2025)

Release Date

2025-03-19

Peptides

Heavy chain of Fab ConD-852: A
Spike protein S1: B
Light chain of Fab ConD-852: C
Heavy chain of Fab S304: D
Light chain of Fab S304: E
Heavy chain of Fab P2C-1F11: F
Light chain of Fac P2C-1F11: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
B

D
H

E
L

F
D

G
F

Heavy chain of Fab ConD-852

Spike protein S1

Light chain of Fab ConD-852

Heavy chain of Fab S304

Light chain of Fab S304

Heavy chain of Fab P2C-1F11

Light chain of Fac P2C-1F11

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