SMTL ID : 9l9a.1

Structure of Western equine encephalitis virus McMillan strain in complex with VLDLR LA2-3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.90 Å

Oligo State

hetero-2-2-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain E: W.20, D.23, D.25, D.27, D.33, E.34 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:W.20, E:D.23, E:D.25, E:D.27, E:E.34 CA.2: 6 residues within 4Å: Chain E: W.63, D.66, E.68, D.70, D.76, E.77 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.66, E:E.68, E:D.70, E:D.76, E:E.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, B. et al., Structural basis for the recognition of two different types of receptors by Western equine encephalitis virus. Cell Rep (2025)

Release Date

2025-06-04

Peptides

Spike glycoprotein E1: AC
Spike glycoprotein E2: BD
Very low-density lipoprotein receptor: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
G

B
B

D
H

E
M

Spike glycoprotein E1

Spike glycoprotein E2

Very low-density lipoprotein receptor

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